ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000385092.1 ENST00000385092.1_6_29_+ 6–29 72.00 91.14 0.86 98.63 MIR30A-201 miRNA HT-29 (Cell line)
ENST00000385129.3 ENST00000385129.3_61_80_+ 61–80 3014.00 94.33 36.16 95.9 MIR27B-201 miRNA HT-29 (Cell line)
ENST00000385129.3 ENST00000385129.3_19_40_+ 19–40 26.00 0.81 0.31 100.0 MIR27B-201 miRNA HT-29 (Cell line)
ENST00000385189.3 ENST00000385189.3_25_47_+ 25–47 137.00 82.53 1.64 100.0 MIR196A2-201 miRNA HT-29 (Cell line)
ENST00000385196.1 ENST00000385196.1_15_36_+ 15–36 417.00 94.56 5.00 100.0 MIR577-201 miRNA HT-29 (Cell line)
ENST00000385199.1 ENST00000385199.1_51_70_+ 51–70 1.00 100.00 0.01 100.0 MIR654-201 miRNA HT-29 (Cell line)
ENST00000385200.3 ENST00000385200.3_33_54_+ 33–54 1.00 100.00 0.01 100.0 MIR204-201 miRNA HT-29 (Cell line)
ENST00000385212.3 ENST00000385212.3_54_76_+ 54–76 2.00 66.67 0.02 100.0 MIR152-201 miRNA HT-29 (Cell line)
ENST00000385227.1 ENST00000385227.1_17_40_+ 17–40 66.00 77.65 0.79 100.0 MIR30C1-201 miRNA HT-29 (Cell line)
ENST00000385235.3 ENST00000385235.3_16_37_+ 16–37 7.00 100.00 0.08 100.0 MIR660-201 miRNA HT-29 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_46_+ 23–46 4020.16 65.33 48.23 68.59 MIR182-201 miRNA HT-29 (Cell line)
ENST00000385255.3 ENST00000385255.3_23_44_+ 23–44 763.66 12.41 9.16 19.75 MIR182-201 miRNA HT-29 (Cell line)
ENST00000385259.1 ENST00000385259.1_13_34_+ 13–34 1.00 16.67 0.01 100.0 MIR100-201 miRNA HT-29 (Cell line)
ENST00000385261.1 ENST00000385261.1_51_73_+ 51–73 300.00 92.31 3.60 100.0 MIR301A-201 miRNA HT-29 (Cell line)
ENST00000385274.1 ENST00000385274.1_55_74_+ 55–74 1.00 100.00 0.01 100.0 MIR130A-201 miRNA HT-29 (Cell line)
ENST00000385277.1 ENST00000385277.1_8_29_+ 8–29 6222.00 99.12 74.64 99.7 MIRLET7F2-201 miRNA HT-29 (Cell line)
ENST00000385278.3 ENST00000385278.3_61_82_+ 61–82 19.00 54.29 0.23 100.0 MIR652-201 miRNA HT-29 (Cell line)
ENST00000385279.1 ENST00000385279.1_16_37_+ 16–37 1.00 100.00 0.01 100.0 MIR653-201 miRNA HT-29 (Cell line)
ENST00000385282.3 ENST00000385282.3_63_84_+ 63–84 61.00 82.43 0.73 100.0 MIR140-201 miRNA HT-29 (Cell line)
ENST00000385301.1 ENST00000385301.1_12_32_+ 12–32 11.00 8.66 0.13 100.0 MIR106B-201 miRNA HT-29 (Cell line)
ENST00000385301.1 ENST00000385301.1_52_71_+ 52–71 33.00 25.98 0.40 75.0 MIR106B-201 miRNA HT-29 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_93_+ 4–93 19464.00 78.46 233.50 98.82 SNORD83A-201 snoRNA HT-29 (Cell line)
ENST00000386747.1 ENST00000386747.1_4_90_+ 4–90 4590.00 18.50 55.06 94.58 SNORD83A-201 snoRNA HT-29 (Cell line)
ENST00000386967.1 ENST00000386967.1_2_70_+ 2–70 1298.00 92.38 15.57 100.0 SNORD41-201 snoRNA HT-29 (Cell line)
ENST00000387314.1 ENST00000387314.1_35_54_+ 35–54 2.00 1.90 0.02 100.0 MT-TF-201 Mt tRNA HT-29 (Cell line)