ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR6-28658237 tRNA-transcript-chr6-28658237_1_22_+ 1–22 185.00 71.43 2.22 100.0 TRNA-TRANSCRIPT-CHR6-28658237 Ala tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-28951029 tRNA-transcript-chr6-28951029_13_32_+ 13–32 51.00 13.01 0.61 100.0 TRNA-TRANSCRIPT-CHR6-28951029 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_69_+ 1–69 70.00 20.17 0.84 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_42_+ 1–42 23.00 6.63 0.28 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHRM-3230 tRNA-transcript-chrM-3230_1_18_+ 1–18 7.00 2.02 0.08 100.0 TRNA-TRANSCRIPT-CHRM-3230 Leu tRNA HT-29 (Cell line)