ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000384873.3 ENST00000384873.3_16_38_+ 16–38 7522.00 99.25 90.24 99.76 MIR191-201 miRNA HT-29 (Cell line)
ENST00000384879.1 ENST00000384879.1_15_37_+ 15–37 2.00 66.67 0.02 66.67 MIR149-201 miRNA HT-29 (Cell line)
ENST00000384881.1 ENST00000384881.1_27_48_+ 27–48 16.00 76.19 0.19 100.0 MIR181C-201 miRNA HT-29 (Cell line)
ENST00000384881.1 ENST00000384881.1_66_87_+ 66–87 3.00 14.29 0.04 100.0 MIR181C-201 miRNA HT-29 (Cell line)
ENST00000384892.1 ENST00000384892.1_15_36_+ 15–36 212.00 92.17 2.54 100.0 MIR194-1-201 miRNA HT-29 (Cell line)
ENST00000384893.1 ENST00000384893.1_52_72_+ 52–72 45.00 91.84 0.54 91.84 MIR128-2-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_14_35_+ 14–35 36.00 2.75 0.43 87.8 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_75_+ 54–75 1186.00 90.67 14.23 94.73 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384918.1 ENST00000384918.1_54_71_+ 54–71 6.00 0.46 0.07 100.0 MIR28-201 miRNA HT-29 (Cell line)
ENST00000384958.1 ENST00000384958.1_27_48_+ 27–48 529.00 77.00 6.35 100.0 MIR183-201 miRNA HT-29 (Cell line)
ENST00000384988.1 ENST00000384988.1_15_36_+ 15–36 1462.00 97.21 17.54 98.38 MIR186-201 miRNA HT-29 (Cell line)
ENST00000384997.3 ENST00000384997.3_57_79_+ 57–79 2923.00 94.56 35.07 100.0 MIR200B-201 miRNA HT-29 (Cell line)
ENST00000385004.1 ENST00000385004.1_16_38_+ 16–38 1999.00 92.59 23.98 96.38 MIR181B2-201 miRNA HT-29 (Cell line)
ENST00000385011.1 ENST00000385011.1_27_48_+ 27–48 77.00 83.70 0.92 90.59 MIR10B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_71_+ 51–71 75.36 37.68 0.90 40.51 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_13_34_+ 13–34 5.00 2.50 0.06 100.0 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385018.1 ENST00000385018.1_51_73_+ 51–73 105.55 52.77 1.27 64.75 MIR130B-201 miRNA HT-29 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_33_+ 11–33 588.82 70.77 7.06 72.78 MIR93-201 miRNA HT-29 (Cell line)
ENST00000385024.1 ENST00000385024.1_11_31_+ 11–31 206.58 24.83 2.48 30.25 MIR93-201 miRNA HT-29 (Cell line)
ENST00000385025.1 ENST00000385025.1_20_41_+ 20–41 30.00 78.95 0.36 88.24 MIR532-201 miRNA HT-29 (Cell line)
ENST00000385045.1 ENST00000385045.1_20_41_+ 20–41 72.00 87.80 0.86 100.0 MIR15B-201 miRNA HT-29 (Cell line)
ENST00000385048.3 ENST00000385048.3_16_37_+ 16–37 3.00 100.00 0.04 100.0 MIR150-201 miRNA HT-29 (Cell line)
ENST00000385051.1 ENST00000385051.1_51_71_+ 51–71 1.00 2.56 0.01 100.0 MIR500A-201 miRNA HT-29 (Cell line)
ENST00000385051.1 ENST00000385051.1_52_74_+ 52–74 36.00 92.31 0.43 100.0 MIR500A-201 miRNA HT-29 (Cell line)
ENST00000385092.1 ENST00000385092.1_47_68_+ 47–68 5.00 6.33 0.06 100.0 MIR30A-201 miRNA HT-29 (Cell line)