ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 16.00 47.06 0.19 100.0 LINC01556-201 lncRNA HT-29 (Cell line)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 12.00 42.86 0.14 100.0 ATAD3A-202 protein coding HT-29 (Cell line)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 10.00 25.00 0.12 47.62 TMC5-202 protein coding HT-29 (Cell line)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 463.00 96.26 5.55 100.0 ZMYM2-203 protein coding HT-29 (Cell line)
ENST00000383858.1 ENST00000383858.1_151_164_+ 151–164 9.00 1.49 0.11 100.0 RNVU1-7-201 snRNA HT-29 (Cell line)
ENST00000383884.1 ENST00000383884.1_1_75_+ 1–75 4051.00 95.05 48.60 100.0 SNORD24-201 snoRNA HT-29 (Cell line)
ENST00000383924.1 ENST00000383924.1_85_107_+ 85–107 24.00 77.42 0.29 100.0 Y_RNA.389-201 misc RNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_42_70_+ 42–70 9.00 0.03 0.11 100.0 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_3_70_+ 3–70 28127.00 87.91 337.42 98.46 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_30_70_+ 30–70 22.00 0.07 0.26 100.0 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384027.1 ENST00000384027.1_2_73_+ 2–73 3303.00 10.32 39.62 84.95 SNORD101-201 snoRNA HT-29 (Cell line)
ENST00000384048.1 ENST00000384048.1_1_66_+ 1–66 26411.00 99.00 316.84 100.0 SNORD37-201 snoRNA HT-29 (Cell line)
ENST00000384304.1 ENST00000384304.1_2_72_+ 2–72 13013.00 75.26 156.11 95.18 SNORD59A-201 snoRNA HT-29 (Cell line)
ENST00000384360.1 ENST00000384360.1_1_47_+ 1–47 71.00 66.98 0.85 100.0 SNORA7B-201 snoRNA HT-29 (Cell line)
ENST00000384390.1 ENST00000384390.1_1_87_+ 1–87 420.00 90.52 5.04 100.0 SNORD14D-201 snoRNA HT-29 (Cell line)
ENST00000384673.1 ENST00000384673.1_82_107_+ 82–107 3.00 15.79 0.04 100.0 Y_RNA.555-201 misc RNA HT-29 (Cell line)
ENST00000384816.1 ENST00000384816.1_52_73_+ 52–73 2288.00 93.73 27.45 96.17 MIR25-201 miRNA HT-29 (Cell line)
ENST00000384819.1 ENST00000384819.1_7_28_+ 7–28 1350.00 91.59 16.20 97.47 MIR99B-201 miRNA HT-29 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_78_+ 58–78 31.00 29.81 0.37 52.54 MIR23B-201 miRNA HT-29 (Cell line)
ENST00000384832.1 ENST00000384832.1_58_81_+ 58–81 66.00 63.46 0.79 77.65 MIR23B-201 miRNA HT-29 (Cell line)
ENST00000384836.1 ENST00000384836.1_66_87_+ 66–87 107.00 78.68 1.28 100.0 MIR203A-201 miRNA HT-29 (Cell line)
ENST00000384850.1 ENST00000384850.1_17_38_+ 17–38 150.00 96.77 1.80 100.0 MIR30B-201 miRNA HT-29 (Cell line)
ENST00000384853.1 ENST00000384853.1_36_58_+ 36–58 24.00 77.42 0.29 100.0 MIR181D-201 miRNA HT-29 (Cell line)
ENST00000384858.1 ENST00000384858.1_27_48_+ 27–48 157.00 96.32 1.88 100.0 MIR215-201 miRNA HT-29 (Cell line)
ENST00000384863.1 ENST00000384863.1_77_98_+ 77–98 13.00 0.17 0.16 100.0 MIR181A2-201 miRNA HT-29 (Cell line)