ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 19.00 0.50 0.23 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 29.00 0.76 0.35 58.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 321.00 8.43 3.85 86.29 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 122.00 3.20 1.46 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_270_331_+ 270–331 357.00 9.38 4.28 69.86 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 196.00 5.15 2.35 79.35 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_238_331_+ 238–331 897.00 23.56 10.76 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 75.00 1.97 0.90 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 53.00 1.39 0.64 100.0 7SK.1-201 misc RNA HT-29 (Cell line)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 806.00 79.10 9.67 100.0 SNORD14C-201 snoRNA HT-29 (Cell line)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 8.00 5.80 0.10 100.0 RNA5SP77-201 rRNA pseudogene HT-29 (Cell line)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 14595.00 93.09 175.09 100.0 SNORD6-201 snoRNA HT-29 (Cell line)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 45.00 0.29 0.54 100.0 SNORD6-201 snoRNA HT-29 (Cell line)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 273.00 50.65 3.28 100.0 RNY3-201 misc RNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 296.00 9.61 3.55 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 434.95 14.12 5.22 48.44 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 41.00 1.33 0.49 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 94.00 3.05 1.13 100.0 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 86.00 2.79 1.03 69.92 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 1012.00 32.85 12.14 87.17 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 477.26 15.49 5.73 53.15 SNORD82-201 snoRNA HT-29 (Cell line)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 43.00 95.56 0.52 97.73 MIR146B-201 miRNA HT-29 (Cell line)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 5.00 27.78 0.06 100.0 SNHG20-201 lncRNA HT-29 (Cell line)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 4.00 3.15 0.05 100.0 ATP5MK-205 protein coding HT-29 (Cell line)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 27.00 21.26 0.32 100.0 ATP5MK-205 protein coding HT-29 (Cell line)