ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 16.00 88.89 0.19 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 7.00 0.34 0.08 23.33 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 23.00 1.10 0.28 76.67 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 1235.00 59.29 14.82 87.96 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 12.00 1.99 0.14 31.58 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 259.27 42.92 3.11 81.02 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 72.68 12.03 0.87 22.23 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 698.00 90.89 8.37 98.31 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 3.00 1.11 0.04 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 135.00 14.09 1.62 68.88 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR5-181218270 tRNA-transcript-chr5-181218270_1_39_+ 1–39 35.00 0.26 0.42 100.0 TRNA-TRANSCRIPT-CHR5-181218270 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-125780247 tRNA-transcript-chr6-125780247_1_42_+ 1–42 88.00 1.24 1.06 88.0 TRNA-TRANSCRIPT-CHR6-125780247 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-144216547 tRNA-transcript-chr6-144216547_1_50_+ 1–50 11.00 22.00 0.13 100.0 TRNA-TRANSCRIPT-CHR6-144216547 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-26311196 tRNA-transcript-chr6-26311196_1_53_+ 1–53 223.00 27.98 2.68 100.0 TRNA-TRANSCRIPT-CHR6-26311196 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-26538054 tRNA-transcript-chr6-26538054_1_33_+ 1–33 14141.00 94.15 169.64 98.75 TRNA-TRANSCRIPT-CHR6-26538054 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_13_33_+ 13–33 6.00 0.32 0.07 100.0 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27158127 tRNA-transcript-chr6-27158127_1_33_+ 1–33 475.00 25.03 5.70 79.17 TRNA-TRANSCRIPT-CHR6-27158127 His tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27206088 tRNA-transcript-chr6-27206088_1_33_+ 1–33 24.00 52.17 0.29 100.0 TRNA-TRANSCRIPT-CHR6-27206088 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27215173 tRNA-transcript-chr6-27215173_1_19_+ 1–19 1.00 4.35 0.01 100.0 TRNA-TRANSCRIPT-CHR6-27215173 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27235509 tRNA-transcript-chr6-27235509_1_33_+ 1–33 13.00 6.84 0.16 100.0 TRNA-TRANSCRIPT-CHR6-27235509 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27280270 tRNA-transcript-chr6-27280270_1_33_+ 1–33 2965.00 93.89 35.57 100.0 TRNA-TRANSCRIPT-CHR6-27280270 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27290626 tRNA-transcript-chr6-27290626_1_33_+ 1–33 90.00 93.75 1.08 100.0 TRNA-TRANSCRIPT-CHR6-27290626 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_53_+ 1–53 2866.00 64.16 34.38 96.21 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27547752 tRNA-transcript-chr6-27547752_1_41_+ 1–41 17.00 0.38 0.20 100.0 TRNA-TRANSCRIPT-CHR6-27547752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR6-27753400 tRNA-transcript-chr6-27753400_1_54_+ 1–54 36.00 0.26 0.43 100.0 TRNA-TRANSCRIPT-CHR6-27753400 Val tRNA HT-29 (Cell line)