ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 13.00 13.83 0.16 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_32_+ 1–32 3.00 3.19 0.04 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 41.00 43.62 0.49 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 28.00 0.32 0.34 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 43.00 48.31 0.52 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 21.00 14.29 0.25 47.73 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_13_+ 1–13 5.00 3.40 0.06 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_32_+ 1–32 23.00 15.65 0.28 52.27 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 36.00 5.92 0.43 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 69.00 11.35 0.83 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 4.00 10.81 0.05 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 144.00 86.75 1.73 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-75035113 tRNA-transcript-chr17-75035113_1_33_+ 1–33 6.00 6.06 0.07 100.0 TRNA-TRANSCRIPT-CHR17-75035113 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 30.00 0.67 0.36 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 38.00 0.85 0.46 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 21.00 0.47 0.25 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 91.00 2.03 1.09 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 101.00 2.25 1.21 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 7.00 0.16 0.08 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 4.00 0.05 0.05 100.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 4.00 0.05 0.05 50.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 443.00 4.99 5.31 98.44 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 313.00 36.27 3.75 71.62 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 15.00 93.75 0.18 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 1.00 11.11 0.01 100.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA HT-29 (Cell line)