ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 43.00 21.72 0.52 84.31 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 15.00 7.58 0.18 25.86 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 56.00 15.09 0.67 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 85.00 1.20 1.02 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 2802.00 39.40 33.61 83.79 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 33.00 22.15 0.40 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 5.00 3.91 0.06 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 29.00 0.65 0.35 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 56.00 4.66 0.67 49.56 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 21.00 1.75 0.25 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 10.00 0.83 0.12 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 23.00 1.92 0.28 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 145.00 12.07 1.74 81.01 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 5.00 0.42 0.06 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 324.00 33.68 3.89 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 167.00 17.36 2.00 55.3 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 157.00 21.27 1.88 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 1.00 0.05 0.01 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 1625.00 76.11 19.49 92.7 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 13.00 0.61 0.16 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 102.00 4.78 1.22 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 2.00 0.09 0.02 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 100.00 14.97 1.20 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 606.00 64.26 7.27 93.37 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 19.00 3.49 0.23 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA HT-29 (Cell line)