ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 129.00 69.35 1.55 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 8.00 4.30 0.10 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 20.00 30.77 0.24 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 31.00 7.93 0.37 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 72.00 58.54 0.86 91.14 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 58.00 0.39 0.70 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 1.00 100.00 0.01 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 187.00 21.64 2.24 91.67 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 10.00 1.16 0.12 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 4.00 0.46 0.05 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 150.00 63.56 1.80 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 108.00 1.52 1.30 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 1832.00 25.71 21.98 91.14 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 9.00 0.13 0.11 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 139.00 1.95 1.67 81.29 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 371.00 5.21 4.45 37.78 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 11.00 0.15 0.13 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 3.00 33.33 0.04 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 6451.00 40.69 77.39 94.81 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 27.00 34.18 0.32 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 2.00 2.53 0.02 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 156.00 52.70 1.87 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 40.00 5.99 0.48 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 547.00 3.45 6.56 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 587.00 3.70 7.04 29.26 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA HT-29 (Cell line)