ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 1009.00 41.97 12.10 99.21 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 93.71 3.90 1.12 41.83 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 130.97 5.45 1.57 42.39 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 70.00 2.91 0.84 80.46 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 41.81 1.74 0.50 41.4 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 77.04 3.20 0.92 70.03 ENST00000823801 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 6763.00 26.24 81.13 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 12.00 0.05 0.14 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 57.00 0.22 0.68 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 18609.00 72.20 223.24 100.0 GAS5-377 lncRNA HT-29 (Cell line)
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 17.00 94.44 0.20 100.0 MIR205HG-245 lncRNA HT-29 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 16.00 10.88 0.19 100.0 TAF12-DT-204 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 239.00 0.11 2.87 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 209544.00 95.96 2513.78 99.86 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 95.00 0.04 1.14 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 480.00 0.22 5.76 100.0 ZFAS1-238 lncRNA HT-29 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 468.00 1.18 5.61 100.0 ZFAS1-242 lncRNA HT-29 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 38448.00 97.12 461.24 100.0 ZFAS1-242 lncRNA HT-29 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 21.00 21.00 0.25 100.0 ENST00000837997 lncRNA HT-29 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 25.00 25.00 0.30 100.0 ENST00000837997 lncRNA HT-29 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 51.00 61.45 0.61 68.0 ENST00000839036 lncRNA HT-29 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 5.00 20.83 0.06 100.0 ENST00000849527 lncRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 286.00 10.87 3.43 97.61 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 1042.00 39.59 12.50 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA HT-29 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 70.00 0.47 0.84 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA HT-29 (Cell line)