ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000776279.1 ENST00000776279.1_161_206_+ 161–206 17.00 0.00 0.20 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_176_234_+ 176–234 54.62 0.01 0.66 59.37 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_172_234_+ 172–234 85.57 0.01 1.03 71.91 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_174_234_+ 174–234 73.24 0.01 0.88 37.75 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_196_234_+ 196–234 150.00 0.02 1.80 96.77 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000776279.1 ENST00000776279.1_184_234_+ 184–234 61.00 0.01 0.73 100.0 SNHG25-206 lncRNA HT-29 (Cell line)
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 11.00 78.57 0.13 100.0 ENST00000778783 lncRNA HT-29 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 18.00 90.00 0.22 94.74 MIR155HG-205 lncRNA HT-29 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 120.00 21.24 1.44 100.0 ENST00000785178 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 74.00 11.46 0.89 89.16 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 171.00 26.47 2.05 100.0 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 9.00 1.39 0.11 18.0 ENST00000786284 lncRNA HT-29 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 641.00 80.63 7.69 91.31 ENST00000788343 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 585.48 26.75 7.02 54.72 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 128.12 5.85 1.54 11.97 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 130.00 5.94 1.56 39.76 ENST00000797550 lncRNA HT-29 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 7050.00 72.71 84.57 95.19 MIR181A1HG-212 lncRNA HT-29 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 88.00 0.91 1.06 100.0 MIR181A1HG-212 lncRNA HT-29 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 912.00 55.24 10.94 100.0 C19orf48P-218 lncRNA HT-29 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 512.00 31.01 6.14 100.0 C19orf48P-218 lncRNA HT-29 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 40.00 38.83 0.48 100.0 ENST00000817026 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 17.00 0.71 0.20 100.0 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 41.04 1.71 0.49 49.45 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 105.08 4.37 1.26 51.01 ENST00000823279 lncRNA HT-29 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 62.00 2.58 0.74 100.0 ENST00000823279 lncRNA HT-29 (Cell line)