ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_1_45_+ 1–45 823.00 0.76 9.87 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 3503.00 3.23 42.02 75.04 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 11413.00 10.54 136.92 98.66 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_79_95_+ 79–95 46.00 0.04 0.55 48.94 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 5454.00 5.04 65.43 87.32 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 3365.00 3.11 40.37 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 148.00 0.14 1.78 12.63 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_20_95_+ 20–95 2213.00 2.04 26.55 57.02 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 4.00 0.00 0.05 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 904.94 0.84 10.86 51.42 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 6.00 11.54 0.07 100.0 Y_RNA.14-201 misc RNA HT-29 (Cell line)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 12.00 3.69 0.14 100.0 RNU5E-1-201 snRNA HT-29 (Cell line)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 1670.00 4.75 20.03 59.16 RNA5SP370-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 12.00 6.70 0.14 100.0 SNORA31-201 snoRNA HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 250.00 0.71 3.00 100.0 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 3244.00 9.22 38.92 80.28 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 1403.00 3.99 16.83 100.0 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 1700.00 4.83 20.39 68.22 RNA5SP389-201 rRNA pseudogene HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 191.00 2.68 2.29 58.05 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 86.00 1.21 1.03 100.0 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 215.88 3.03 2.59 61.33 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 246.14 3.46 2.95 39.83 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 293.00 4.12 3.51 39.81 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 173.60 2.44 2.08 43.18 RNU5A-1-201 snRNA HT-29 (Cell line)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 583.00 8.19 6.99 80.3 RNU5A-1-201 snRNA HT-29 (Cell line)