ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362177.3 ENST00000362177.3_43_64_+ 43–64 837.00 95.66 10.04 97.21 MIR378A-201 miRNA HT-29 (Cell line)
ENST00000362181.3 ENST00000362181.3_6_27_+ 6–27 36.00 67.92 0.43 100.0 MIR361-201 miRNA HT-29 (Cell line)
ENST00000362195.3 ENST00000362195.3_48_66_+ 48–66 1.00 0.83 0.01 8.33 MIR101-2-201 miRNA HT-29 (Cell line)
ENST00000362195.3 ENST00000362195.3_49_70_+ 49–70 105.00 86.78 1.26 90.52 MIR101-2-201 miRNA HT-29 (Cell line)
ENST00000362205.1 ENST00000362205.1_10_31_+ 10–31 2248.00 98.47 26.97 99.21 MIR26A1-201 miRNA HT-29 (Cell line)
ENST00000362215.3 ENST00000362215.3_44_65_+ 44–65 81.00 94.19 0.97 94.19 MIR148A-201 miRNA HT-29 (Cell line)
ENST00000362251.4 ENST00000362251.4_12_33_+ 12–33 434.00 93.94 5.21 95.81 MIR26B-201 miRNA HT-29 (Cell line)
ENST00000362252.3 ENST00000362252.3_63_86_+ 63–86 112.00 66.27 1.34 78.87 MIR148B-201 miRNA HT-29 (Cell line)
ENST00000362280.3 ENST00000362280.3_5_26_+ 5–26 534.00 97.27 6.41 99.63 MIRLET7G-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_21_+ 6–21 6.00 0.58 0.07 100.0 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_29_+ 6–29 982.00 95.06 11.78 99.29 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362283.1 ENST00000362283.1_6_25_+ 6–25 14.00 1.36 0.17 66.67 MIR30D-201 miRNA HT-29 (Cell line)
ENST00000362291.1 ENST00000362291.1_52_73_+ 52–73 1.00 50.00 0.01 100.0 MIR126-201 miRNA HT-29 (Cell line)
ENST00000362291.1 ENST00000362291.1_15_35_+ 15–35 1.00 50.00 0.01 100.0 MIR126-201 miRNA HT-29 (Cell line)
ENST00000362298.3 ENST00000362298.3_42_63_+ 42–63 16.00 55.17 0.19 100.0 MIR374A-201 miRNA HT-29 (Cell line)
ENST00000362307.1 ENST00000362307.1_8_29_+ 8–29 1744.00 85.74 20.92 100.0 MIR31-201 miRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_23_95_+ 23–95 3503.00 3.23 42.02 75.04 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_5_95_+ 5–95 11413.00 10.54 136.92 98.66 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_83_+ 1–83 1153.00 1.06 13.83 40.84 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_49_+ 1–49 5454.00 5.04 65.43 87.32 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_58_+ 1–58 3365.00 3.11 40.37 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_26_95_+ 26–95 148.00 0.14 1.78 12.63 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_14_32_+ 14–32 4.00 0.00 0.05 100.0 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_15_95_+ 15–95 904.94 0.84 10.86 51.42 RNA5S12-201 rRNA HT-29 (Cell line)
ENST00000362400.1 ENST00000362400.1_1_95_+ 1–95 23717.00 21.90 284.52 99.35 RNA5S12-201 rRNA HT-29 (Cell line)