ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000654356.2 ENST00000654356.2_469_540_+ 469–540 4924.00 7.15 59.07 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1442_+ 1368–1442 7702.00 11.18 92.40 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_281_353_+ 281–353 324.00 6.21 3.89 51.59 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_293_352_+ 293–352 1023.00 19.60 12.27 100.0 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_283_352_+ 283–352 432.00 8.28 5.18 52.49 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655317.2 ENST00000655317.2_271_353_+ 271–353 523.00 10.02 6.27 100.0 ENST00000655317 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_842_+ 807–842 33.00 3.16 0.40 43.42 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_839_+ 807–839 761.00 72.82 9.13 100.0 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000655600.1 ENST00000655600.1_807_829_+ 807–829 51.00 4.88 0.61 100.0 LINC01962-202 lncRNA HT-29 (Cell line)
ENST00000658801.2 ENST00000658801.2_139_171_+ 139–171 2.00 0.72 0.02 100.0 LIMD1-AS1-204 lncRNA HT-29 (Cell line)
ENST00000658801.2 ENST00000658801.2_178_214_+ 178–214 87.00 31.52 1.04 82.86 LIMD1-AS1-204 lncRNA HT-29 (Cell line)
ENST00000661688.1 ENST00000661688.1_928_950_+ 928–950 1.00 8.33 0.01 100.0 MIR9-2HG-225 lncRNA HT-29 (Cell line)
ENST00000663187.1 ENST00000663187.1_2_76_+ 2–76 728.00 84.65 8.73 100.0 SNHG17-252 lncRNA HT-29 (Cell line)
ENST00000666735.2 ENST00000666735.2_72_128_+ 72–128 99.00 7.08 1.19 100.0 ENST00000666735 lncRNA HT-29 (Cell line)
ENST00000666735.2 ENST00000666735.2_77_128_+ 77–128 165.00 11.80 1.98 100.0 ENST00000666735 lncRNA HT-29 (Cell line)
ENST00000667814.1 ENST00000667814.1_2_68_+ 2–68 1.00 100.00 0.01 100.0 MEG8-244 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_295_321_+ 295–321 31.00 0.01 0.37 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2490_2559_+ 2490–2559 2.00 0.00 0.02 100.0 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2195_2223_+ 2195–2223 590.00 0.11 7.08 98.01 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_523_581_+ 523–581 137.96 0.03 1.66 58.71 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1946_1982_+ 1946–1982 158.00 0.03 1.90 91.86 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_1921_1982_+ 1921–1982 219433.00 40.71 2632.41 95.36 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2522_2560_+ 2522–2560 29.00 0.01 0.35 82.86 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2157_2223_+ 2157–2223 10118.00 1.88 121.38 99.88 SNHG1-248 lncRNA HT-29 (Cell line)
ENST00000668048.2 ENST00000668048.2_2532_2560_+ 2532–2560 292.00 0.05 3.50 100.0 SNHG1-248 lncRNA HT-29 (Cell line)