ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 33.00 5.38 0.40 47.14 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 111.00 18.11 1.33 85.38 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 52.00 8.48 0.62 46.02 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 37.00 6.04 0.44 52.86 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 100.00 16.31 1.20 87.72 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 48.00 7.83 0.58 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 29.00 4.73 0.35 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 70.00 11.42 0.84 100.0 CTC1-214 protein coding HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 187.00 7.48 2.24 78.9 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 24.00 0.96 0.29 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 44.00 1.76 0.53 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_33_+ 6–33 112.00 4.48 1.34 52.09 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_70_88_+ 70–88 4.00 0.16 0.05 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_75_+ 6–75 28.00 1.12 0.34 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_79_+ 6–79 39.00 1.56 0.47 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_28_+ 6–28 12.00 0.48 0.14 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_88_+ 6–88 44.00 1.76 0.53 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_36_+ 6–36 302.00 12.08 3.62 56.66 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_51_+ 6–51 50.00 2.00 0.60 100.0 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000651540.1 ENST00000651540.1_6_39_+ 6–39 864.00 34.55 10.36 79.56 ENST00000651540 lncRNA HT-29 (Cell line)
ENST00000652769.2 ENST00000652769.2_3101_3122_+ 3101–3122 1349.00 10.34 16.18 100.0 MIRLET7A1HG-203 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1000_1070_+ 1000–1070 54824.00 79.61 657.69 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1368_1394_+ 1368–1394 11.00 0.02 0.13 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1402_1442_+ 1402–1442 40.00 0.06 0.48 100.0 SNHG29-232 lncRNA HT-29 (Cell line)
ENST00000654356.2 ENST00000654356.2_1393_1442_+ 1393–1442 21.00 0.03 0.25 100.0 SNHG29-232 lncRNA HT-29 (Cell line)