ENCFF540WGH

Library Details

Organism: Homo Sapiens
Biosample: HT-29 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR807KQN
Description: Part of ENCODE experiment ENCSR807KQN. The libraries contained in this experiment come from independent growths of cell line, HT-29. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 20056.00 98.02 240.60 100.0 SNORD100-201 snoRNA HT-29 (Cell line)
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 39.00 13.73 0.47 100.0 SNORD111B-201 snoRNA HT-29 (Cell line)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 1.00 1.30 0.01 100.0 RNU2-36P-201 snRNA HT-29 (Cell line)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 27.00 35.06 0.32 100.0 RNU2-36P-201 snRNA HT-29 (Cell line)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 18.00 0.06 0.22 100.0 SNORD19C-201 snoRNA HT-29 (Cell line)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 26330.00 89.18 315.87 92.41 SNORD19C-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 73.00 0.04 0.88 100.0 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 156171.00 90.72 1873.49 93.93 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 2209.00 1.28 26.50 100.0 SNORD12B-201 snoRNA HT-29 (Cell line)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 34.00 37.78 0.41 100.0 Y_RNA.609-201 misc RNA HT-29 (Cell line)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 3.00 12.50 0.04 100.0 Y_RNA.612-201 misc RNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 494.00 3.72 5.93 100.0 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 4.00 0.03 0.05 100.0 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 12427.00 93.65 149.08 97.64 SNORD71-201 snoRNA HT-29 (Cell line)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 26789.00 89.58 321.37 92.87 MIR194-2HG-201 lncRNA HT-29 (Cell line)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 2701.00 9.03 32.40 49.36 MIR194-2HG-201 lncRNA HT-29 (Cell line)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 11.00 5.70 0.13 100.0 LINC01783-201 lncRNA HT-29 (Cell line)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 28.00 96.55 0.34 100.0 RPS7P15-201 processed pseudogene HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 3.00 0.93 0.04 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 154.00 47.83 1.85 92.77 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 23.00 7.14 0.28 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 4.00 1.24 0.05 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 9.00 2.80 0.11 100.0 SNORD62B-201 snoRNA HT-29 (Cell line)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 170.00 98.84 2.04 100.0 MRPL32-203 nonsense mediated decay HT-29 (Cell line)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 149.00 96.13 1.79 100.0 ENST00000436739 lncRNA HT-29 (Cell line)