ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2175.00 0.37 9.01 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1293.00 0.22 5.36 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 8268.00 1.39 34.26 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 14.00 0.00 0.06 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 678.00 0.11 2.81 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 3657.00 0.62 15.15 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 33576.00 5.66 139.14 88.46 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 17195.00 2.90 71.26 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 106.00 0.02 0.44 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 597.00 0.10 2.47 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 4625.00 0.78 19.17 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 106414.00 17.95 440.99 100.0 GAS5-230 retained intron spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_696_716_+ 696–716 64.00 13.50 0.27 100.0 FTX-219 lncRNA spleen (Tissue)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 302.00 63.71 1.25 91.79 FTX-219 lncRNA spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5199_5247_+ 5199–5247 276.00 2.55 1.14 61.06 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 250.00 2.31 1.04 75.3 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 4762.00 43.95 19.73 84.93 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 176.00 1.62 0.73 38.94 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 1895.00 17.49 7.85 59.59 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 650.00 6.00 2.69 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 593.00 5.47 2.46 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 210.00 1.94 0.87 100.0 CTC1-214 protein coding spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_45_+ 6–45 655.00 1.79 2.71 77.42 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_57_88_+ 57–88 2750.00 7.52 11.40 92.81 ENST00000651540 lncRNA spleen (Tissue)
ENST00000651540.1 ENST00000651540.1_6_55_+ 6–55 25.00 0.07 0.10 100.0 ENST00000651540 lncRNA spleen (Tissue)