ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 1851.00 18.21 7.67 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 18.00 0.18 0.07 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1183.00 11.64 4.90 100.0 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 2697.00 26.54 11.18 87.03 SNORD62B-201 snoRNA spleen (Tissue)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 76.00 98.70 0.31 100.0 MRPL32-203 nonsense mediated decay spleen (Tissue)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 38.00 79.17 0.16 100.0 ENST00000436739 lncRNA spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 20733.00 34.94 85.92 57.8 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1182_1225_+ 1182–1225 687.00 1.16 2.85 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1209_1267_+ 1209–1267 11376.00 19.17 47.14 85.41 TMEM107-204 protein coding spleen (Tissue)
ENST00000437139.7 ENST00000437139.7_1225_1267_+ 1225–1267 27.00 0.05 0.11 100.0 TMEM107-204 protein coding spleen (Tissue)
ENST00000448136.6 ENST00000448136.6_1027_1095_+ 1027–1095 499.00 40.40 2.07 100.0 SNHG16-201 lncRNA spleen (Tissue)
ENST00000458770.1 ENST00000458770.1_7_74_+ 7–74 20997.00 85.01 87.01 94.47 SNORD105B-201 snoRNA spleen (Tissue)
ENST00000458838.1 ENST00000458838.1_8_75_+ 8–75 477.00 30.40 1.98 51.4 SNORD121B-201 snoRNA spleen (Tissue)
ENST00000458892.1 ENST00000458892.1_5_39_+ 5–39 436.00 31.39 1.81 100.0 SNORD127-201 snoRNA spleen (Tissue)
ENST00000458893.1 ENST00000458893.1_3_64_+ 3–64 11423.00 92.20 47.34 100.0 SNORD42B-201 snoRNA spleen (Tissue)
ENST00000459254.1 ENST00000459254.1_69_90_+ 69–90 138.00 2.25 0.57 100.0 RNY4P25-201 misc RNA spleen (Tissue)
ENST00000459386.1 ENST00000459386.1_9_73_+ 9–73 339.00 79.95 1.40 100.0 SNORD121A-201 snoRNA spleen (Tissue)
ENST00000459475.1 ENST00000459475.1_4_72_+ 4–72 1697.00 93.04 7.03 100.0 SNORD126-201 snoRNA spleen (Tissue)
ENST00000461448.6 ENST00000461448.6_522_587_+ 522–587 2678.00 49.67 11.10 100.0 SNHG12-201 retained intron spleen (Tissue)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 3265.00 95.78 13.53 100.0 SMC1A-204 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 389.00 12.86 1.61 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 1397.00 46.20 5.79 100.0 DDX39B-219 retained intron spleen (Tissue)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 4156.00 85.66 17.22 100.0 RPS8-206 protein coding CDS not defined spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 329.00 5.04 1.36 100.0 RPL13-207 retained intron spleen (Tissue)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 3679.00 56.41 15.25 100.0 RPL13-207 retained intron spleen (Tissue)