ENCFF534JKI

Library Details

Organism: Homo Sapiens
Biosample: spleen (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR307FBN
Description: Part of ENCODE experiment ENCSR307FBN. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's spleen tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1029.00 0.16 4.26 42.88 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 2086.00 0.32 8.64 100.0 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 5385.00 0.83 22.32 41.72 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 10405.00 1.61 43.12 71.07 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 839.00 0.13 3.48 32.16 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 466.00 0.07 1.93 40.14 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 15836.00 2.45 65.63 86.54 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 85734.00 13.25 355.29 83.26 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 415804.00 64.29 1723.13 97.52 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 4417.00 0.68 18.30 33.34 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 42164.00 6.52 174.73 59.0 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 2273.00 0.35 9.42 100.0 EIF4A2-219 retained intron spleen (Tissue)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 11.00 3.25 0.05 100.0 RPS8-207 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_456_524_+ 456–524 146.00 13.24 0.61 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 184.00 16.68 0.76 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 431.00 39.08 1.79 100.0 RPL7A-206 protein coding CDS not defined spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 9.00 0.00 0.04 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 12647.00 2.08 52.41 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 1271.00 0.21 5.27 100.0 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 27596.00 4.53 114.36 94.8 RPL21-209 retained intron spleen (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 556243.00 91.31 2305.12 97.55 RPL21-209 retained intron spleen (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 18.00 25.71 0.07 100.0 GABRE-209 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 1006.00 9.44 4.17 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 22.00 0.21 0.09 100.0 RPL13A-212 retained intron spleen (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 101.00 0.95 0.42 100.0 RPL13A-212 retained intron spleen (Tissue)