ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000686899.3 ENST00000686899.3_568_647_+ 568–647 4931.97 7.93 50.06 13.89 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_648_+ 562–648 0.93 0.00 0.01 46.62 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000686899.3 ENST00000686899.3_562_650_+ 562–650 1.44 0.00 0.01 72.05 SNHG19-202 lncRNA OCI-LY7 (Cell line)
ENST00000688264.3 ENST00000688264.3_1402_1424_+ 1402–1424 1.00 50.00 0.01 100.0 MIR222HG-206 lncRNA OCI-LY7 (Cell line)
ENST00000697734.1 ENST00000697734.1_1838_1871_+ 1838–1871 74.00 8.64 0.75 100.0 RPSA-216 retained intron OCI-LY7 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_564_+ 547–564 5.00 55.56 0.05 100.0 MIR99AHG-370 lncRNA OCI-LY7 (Cell line)
ENST00000697879.1 ENST00000697879.1_547_568_+ 547–568 2.00 22.22 0.02 100.0 MIR99AHG-370 lncRNA OCI-LY7 (Cell line)
ENST00000699245.1 ENST00000699245.1_739_776_+ 739–776 1885.00 95.64 19.13 100.0 HPS4-237 retained intron OCI-LY7 (Cell line)
ENST00000703637.1 ENST00000703637.1_459_481_+ 459–481 45.00 9.74 0.46 100.0 DNAJC5-203 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000707189.1 ENST00000707189.1_1316_1333_+ 1316–1333 114.00 7.10 1.16 100.0 ENST00000707189 TEC OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2069_2124_+ 2069–2124 2063.00 1.15 20.94 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1419_1441_+ 1419–1441 846.00 0.47 8.59 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1873_1895_+ 1873–1895 1008.00 0.56 10.23 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1932_2007_+ 1932–2007 8205.00 4.58 83.29 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2183_+ 2162–2183 127048.39 70.89 1289.67 80.96 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1557_1579_+ 1557–1579 21.00 0.01 0.21 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_1740_1762_+ 1740–1762 114.00 0.06 1.16 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2162_2185_+ 2162–2185 35550.59 19.84 360.87 26.07 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000710424.1 ENST00000710424.1_2046_2067_+ 2046–2067 656.00 0.37 6.66 100.0 MIR17HG-214 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_352_421_+ 352–421 3197.00 1.08 32.45 90.46 SNHG32-223 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_384_+ 356–384 1337.00 0.45 13.57 100.0 SNHG32-223 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_387_419_+ 387–419 190.00 0.06 1.93 100.0 SNHG32-223 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_359_419_+ 359–419 226.00 0.08 2.29 100.0 SNHG32-223 lncRNA OCI-LY7 (Cell line)
ENST00000718227.1 ENST00000718227.1_356_419_+ 356–419 288864.00 97.35 2932.26 100.0 SNHG32-223 lncRNA OCI-LY7 (Cell line)
ENST00000718231.1 ENST00000718231.1_1988_2016_+ 1988–2016 340.00 0.81 3.45 100.0 SNHG32-227 lncRNA OCI-LY7 (Cell line)