ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 123562.00 57.84 1254.28 99.72 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 301.00 0.14 3.06 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 2351.00 1.10 23.86 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 1883.00 0.88 19.11 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 1569.00 0.73 15.93 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 4092.00 1.92 41.54 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 84.00 0.04 0.85 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 106.00 0.05 1.08 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 289.00 0.14 2.93 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2898_2925_+ 2898–2925 2116.00 0.99 21.48 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 1797.00 0.84 18.24 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2707_+ 2631–2707 1246.00 0.58 12.65 99.52 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2172_2243_+ 2172–2243 28845.00 13.50 292.81 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_400_440_+ 400–440 100.00 0.05 1.02 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1452_+ 1391–1452 2298.00 1.08 23.33 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2925_+ 2858–2925 10369.00 4.85 105.26 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1118_+ 1048–1118 281.00 0.13 2.85 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000651140.1 ENST00000651140.1_890_912_+ 890–912 5.00 35.71 0.05 71.43 FTX-219 lncRNA OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5201_5247_+ 5201–5247 41.00 2.89 0.42 56.16 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5177_+ 5163–5177 359.00 25.32 3.64 93.73 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5214_5247_+ 5214–5247 60.00 4.23 0.61 100.0 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5185_+ 5163–5185 170.00 11.99 1.73 100.0 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5230_5247_+ 5230–5247 165.00 11.64 1.67 100.0 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5233_5247_+ 5233–5247 102.00 7.19 1.04 62.96 CTC1-214 protein coding OCI-LY7 (Cell line)
ENST00000651323.1 ENST00000651323.1_5163_5174_+ 5163–5174 57.00 4.02 0.58 18.51 CTC1-214 protein coding OCI-LY7 (Cell line)