ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 28.00 1.97 0.28 46.67 ENST00000619323 lncRNA OCI-LY7 (Cell line)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 1295.00 91.26 13.15 97.22 ENST00000619323 lncRNA OCI-LY7 (Cell line)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 113.00 13.55 1.15 100.0 SCARNA4-202 scaRNA OCI-LY7 (Cell line)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 706.00 61.28 7.17 100.0 ENST00000625572 miRNA OCI-LY7 (Cell line)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 1131.00 62.87 11.48 100.0 ENST00000628177 snoRNA OCI-LY7 (Cell line)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 16546.00 91.66 167.96 100.0 ENST00000630615 snoRNA OCI-LY7 (Cell line)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 39.00 56.52 0.40 100.0 DMRT2-209 protein coding OCI-LY7 (Cell line)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 3.00 4.35 0.03 100.0 DMRT2-209 protein coding OCI-LY7 (Cell line)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 176.00 18.39 1.79 100.0 SNORD98-201 snoRNA OCI-LY7 (Cell line)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 427.00 44.62 4.33 100.0 SNORD98-201 snoRNA OCI-LY7 (Cell line)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 25641.14 17.06 260.28 20.6 MIR106AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 20.00 0.01 0.20 100.0 MIR106AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 2.00 28.57 0.02 100.0 SNHG14-224 lncRNA OCI-LY7 (Cell line)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 3460.16 56.90 35.12 84.19 5S_rRNA.20-201 rRNA pseudogene OCI-LY7 (Cell line)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 999.00 9.09 10.14 100.0 HSPA9-211 retained intron OCI-LY7 (Cell line)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 7929.00 72.11 80.49 97.3 HSPA9-211 retained intron OCI-LY7 (Cell line)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 1.00 100.00 0.01 100.0 DNM3OS-205 lncRNA OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2890_2925_+ 2890–2925 3349.00 1.57 34.00 72.18 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 45.00 0.02 0.46 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3382.00 1.58 34.33 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 86.00 0.04 0.87 54.43 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 7132.00 3.34 72.40 99.22 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 127.00 0.06 1.29 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 166.00 0.08 1.69 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 254.00 0.12 2.58 100.0 GAS5-230 retained intron OCI-LY7 (Cell line)