ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1.00 0.81 0.01 50.0 MIR23AHG-201 lncRNA OCI-LY7 (Cell line)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 7.00 35.00 0.07 100.0 ODAD3-204 nonsense mediated decay OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 36.00 5.21 0.37 100.0 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 34.00 4.92 0.35 100.0 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 432.00 62.52 4.39 73.47 VMP1-217 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1568.00 0.16 15.92 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 396862.29 41.70 4028.55 50.56 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 540630.38 56.81 5487.94 60.17 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 28472.00 2.99 289.02 86.97 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 729.00 0.08 7.40 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 3.00 0.00 0.03 100.0 C19orf48P-203 retained intron OCI-LY7 (Cell line)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 64.00 9.03 0.65 100.0 RPS11-206 retained intron OCI-LY7 (Cell line)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 242.00 34.13 2.46 100.0 RPS11-206 retained intron OCI-LY7 (Cell line)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1.00 100.00 0.01 100.0 CARMN-209 lncRNA OCI-LY7 (Cell line)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 2076.00 41.42 21.07 100.0 ENST00000602478 lncRNA OCI-LY7 (Cell line)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 11.00 10.38 0.11 100.0 PPFIA1P1-201 processed pseudogene OCI-LY7 (Cell line)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 11.00 100.00 0.11 100.0 MIR98-201 miRNA OCI-LY7 (Cell line)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 36.00 61.02 0.37 100.0 MIR15A-201 miRNA OCI-LY7 (Cell line)
ENST00000607520.2 ENST00000607520.2_5465_5487_+ 5465–5487 25.00 14.12 0.25 100.0 SNHG21-206 retained intron OCI-LY7 (Cell line)
ENST00000607707.1 ENST00000607707.1_5_84_+ 5–84 39.00 25.00 0.40 100.0 SNORD11B-201 snoRNA OCI-LY7 (Cell line)
ENST00000608459.2 ENST00000608459.2_31_111_+ 31–111 2532.00 76.94 25.70 100.0 SNORD91B-201 snoRNA OCI-LY7 (Cell line)
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 8287.00 73.69 84.12 91.49 SNORD91A-201 snoRNA OCI-LY7 (Cell line)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 867.00 46.02 8.80 97.53 MIR486-1-201 miRNA OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 830.00 3.93 8.43 27.28 NOP56-219 retained intron OCI-LY7 (Cell line)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 714.00 3.38 7.25 100.0 NOP56-219 retained intron OCI-LY7 (Cell line)