ENCFF521RDG

Library Details

Organism: Homo Sapiens
Biosample: OCI-LY7 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR740DKM
Description: Part of ENCODE experiment ENCSR740DKM. The libraries contained in this experiment come from independent growths of cell line, Oci-Ly-7. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000525239.5 ENST00000525239.5_22_116_+ 22–116 241.00 0.04 2.45 100.0 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 149.00 0.02 1.51 88.17 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 2.00 0.00 0.02 100.0 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 29.00 0.00 0.29 52.73 WDR74-204 protein coding OCI-LY7 (Cell line)
ENST00000527983.5 ENST00000527983.5_1320_1408_+ 1320–1408 1537.00 60.02 15.60 100.0 HSPA8-211 retained intron OCI-LY7 (Cell line)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 19.00 2.60 0.19 100.0 SCARNA9-201 lncRNA OCI-LY7 (Cell line)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 82897.00 93.01 841.49 100.0 TAF1D-215 retained intron OCI-LY7 (Cell line)
ENST00000530769.5 ENST00000530769.5_2550_2623_+ 2550–2623 204.00 0.23 2.07 100.0 TAF1D-215 retained intron OCI-LY7 (Cell line)
ENST00000532091.1 ENST00000532091.1_1128_1221_+ 1128–1221 68.00 0.83 0.69 100.0 HSPA8-215 retained intron OCI-LY7 (Cell line)
ENST00000532091.1 ENST00000532091.1_1133_1221_+ 1133–1221 6469.00 78.72 65.67 100.0 HSPA8-215 retained intron OCI-LY7 (Cell line)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 221.00 2.69 2.24 100.0 HSPA8-215 retained intron OCI-LY7 (Cell line)
ENST00000533872.5 ENST00000533872.5_427_507_+ 427–507 743.00 31.71 7.54 100.0 RPS2-215 retained intron OCI-LY7 (Cell line)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 15.00 88.24 0.15 100.0 ENST00000548801 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_368_+ 275–368 674.00 16.96 6.84 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 965.00 24.28 9.80 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 68.00 1.71 0.69 100.0 ENST00000554988 lncRNA OCI-LY7 (Cell line)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 1.00 50.00 0.01 100.0 SNHG14-220 retained intron OCI-LY7 (Cell line)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 1.00 50.00 0.01 100.0 SNHG14-220 retained intron OCI-LY7 (Cell line)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 146.00 97.33 1.48 100.0 TEKT4P2-201 transcribed unprocessed pseudogene OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_317_+ 276–317 437.00 0.82 4.44 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 40.00 0.08 0.41 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 128.00 0.24 1.30 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 31.00 0.06 0.31 100.0 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 48695.00 91.66 494.30 99.03 RPL4-202 retained intron OCI-LY7 (Cell line)
ENST00000563103.1 ENST00000563103.1_221_256_+ 221–256 271.00 5.22 2.75 100.0 ENST00000563103 lncRNA OCI-LY7 (Cell line)