ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 147.00 0.59 0.12 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 621.00 2.49 0.52 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365382.1 ENST00000365382.1_1_88_+ 1–88 5369.00 66.56 4.50 100.0 SNORD14C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365391.1 ENST00000365391.1_2_82_+ 2–82 4018.00 73.60 3.37 100.0 SNORD115-44-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365394.1 ENST00000365394.1_85_96_+ 85–96 645.00 45.81 0.54 100.0 RNA5SP77-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_35_67_+ 35–67 2737.00 34.58 2.29 100.0 SNORD114-22-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365423.1 ENST00000365423.1_4_67_+ 4–67 4886.00 61.72 4.09 97.33 SNORD114-22-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_30_69_+ 30–69 2001.00 2.00 1.68 100.0 SNORD6-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365444.1 ENST00000365444.1_3_69_+ 3–69 93237.00 93.17 78.11 100.0 SNORD6-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365484.1 ENST00000365484.1_1_95_+ 1–95 1625.00 20.78 1.36 100.0 RNY3-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_4_67_+ 4–67 22923.00 28.03 19.20 99.14 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_37_67_+ 37–67 6429.00 7.86 5.39 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_30_67_+ 30–67 10702.00 13.08 8.97 84.77 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_48_+ 3–48 12279.63 15.01 10.29 37.55 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_46_+ 3–46 20294.77 24.81 17.00 62.07 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_39_+ 3–39 1502.00 1.84 1.26 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365530.1 ENST00000365530.1_3_29_+ 3–29 235.00 0.29 0.20 100.0 SNORD82-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365699.4 ENST00000365699.4_9_32_+ 9–32 92011.00 94.16 77.08 95.48 MIR146B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000366365.3 ENST00000366365.3_327_364_+ 327–364 6.00 5.08 0.01 100.0 SNHG20-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_444_466_+ 444–466 489.00 24.33 0.41 100.0 ATP5MK-205 protein coding hepatocyte (In vitro differentiated cells)
ENST00000369825.6 ENST00000369825.6_405_425_+ 405–425 431.00 21.44 0.36 100.0 ATP5MK-205 protein coding hepatocyte (In vitro differentiated cells)
ENST00000377186.4 ENST00000377186.4_697_717_+ 697–717 90.00 36.44 0.08 100.0 LINC01556-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000378755.9 ENST00000378755.9_1289_1300_+ 1289–1300 127.00 9.41 0.11 100.0 ATAD3A-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000381414.8 ENST00000381414.8_4377_4392_+ 4377–4392 160.00 28.42 0.13 55.36 TMC5-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000382874.6 ENST00000382874.6_779_809_+ 779–809 311.00 82.49 0.26 100.0 ZMYM2-203 protein coding hepatocyte (In vitro differentiated cells)