ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000364722.1 ENST00000364722.1_2_30_+ 2–30 623.00 29.32 0.52 100.0 ENST00000364722 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364809.1 ENST00000364809.1_2_81_+ 2–81 6005.00 54.35 5.03 100.0 SNORD115-15-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364830.3 ENST00000364830.3_3_67_+ 3–67 131.00 49.81 0.11 100.0 SNORD113-3-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364884.1 ENST00000364884.1_1_66_+ 1–66 72978.00 86.87 61.14 100.0 SNORD52-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_2_74_+ 2–74 14513.00 57.45 12.16 79.4 SNORD117-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364915.1 ENST00000364915.1_1_76_+ 1–76 3765.00 14.90 3.15 26.87 SNORD117-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_3_71_+ 3–71 3162.00 90.89 2.65 97.56 SNORD114-3-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_38_71_+ 38–71 74.00 2.13 0.06 100.0 SNORD114-3-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364969.1 ENST00000364969.1_4_62_+ 4–62 48.00 1.38 0.04 100.0 SNORD114-3-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364991.1 ENST00000364991.1_17_30_+ 17–30 72.00 9.97 0.06 100.0 RNA5SP298-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000365037.1 ENST00000365037.1_2_82_+ 2–82 3906.00 72.49 3.27 100.0 SNORD115-38-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365073.1 ENST00000365073.1_2_81_+ 2–81 7474.00 59.05 6.26 100.0 SNORD115-10-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365080.1 ENST00000365080.1_3_67_+ 3–67 575.00 90.84 0.48 100.0 SNORD113-9-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365099.1 ENST00000365099.1_2_82_+ 2–82 907.00 41.62 0.76 100.0 SNORD115-20-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_68_+ 1–68 39716.00 85.74 33.27 100.0 SNORD38A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_38_+ 1–38 3789.00 8.18 3.17 100.0 SNORD38A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365161.1 ENST00000365161.1_1_41_+ 1–41 831.00 1.79 0.70 100.0 SNORD38A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365178.1 ENST00000365178.1_4_67_+ 4–67 2244.00 92.35 1.88 97.78 SNORD114-20-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_273_331_+ 273–331 2066.00 8.29 1.73 74.48 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_260_331_+ 260–331 203.00 0.81 0.17 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_76_+ 1–76 147.00 0.59 0.12 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_246_331_+ 246–331 621.00 2.49 0.52 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_1_63_+ 1–63 67.00 0.27 0.06 68.37 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_282_331_+ 282–331 5850.00 23.49 4.90 100.0 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000365328.1 ENST00000365328.1_277_331_+ 277–331 2801.00 11.24 2.35 79.82 7SK.1-201 misc RNA hepatocyte (In vitro differentiated cells)