ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000363887.1 ENST00000363887.1_2_82_+ 2–82 3664.00 59.17 3.07 100.0 SNORD115-16-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364079.1 ENST00000364079.1_2_82_+ 2–82 3976.00 57.25 3.33 100.0 SNORD115-32-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364117.1 ENST00000364117.1_2_82_+ 2–82 1959.00 71.08 1.64 100.0 SNORD115-30-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_30_+ 1–30 642.11 11.13 0.54 42.27 RNY1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_63_+ 1–63 46.00 0.80 0.04 100.0 RNY1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_24_109_+ 24–109 198.00 3.43 0.17 100.0 RNY1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_39_+ 1–39 103.00 1.79 0.09 100.0 RNY1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364228.1 ENST00000364228.1_1_32_+ 1–32 1152.67 19.98 0.97 60.16 RNY1-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364273.1 ENST00000364273.1_2_82_+ 2–82 3705.00 48.57 3.10 100.0 SNORD115-42-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_101_119_+ 101–119 10572.04 3.18 8.86 51.03 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_119_+ 71–119 521.00 0.16 0.44 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_83_119_+ 83–119 4483.00 1.35 3.76 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_87_119_+ 87–119 2096.00 0.63 1.76 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_52_119_+ 52–119 334.00 0.10 0.28 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_37_95_+ 37–95 9343.20 2.81 7.83 65.89 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_62_119_+ 62–119 1035.00 0.31 0.87 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_35_95_+ 35–95 9855.25 2.97 8.26 63.13 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364315.1 ENST00000364315.1_71_95_+ 71–95 619.00 0.19 0.52 100.0 RNA5SP202-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_4_67_+ 4–67 1014.00 52.21 0.85 100.0 SNORD114-9-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364370.1 ENST00000364370.1_35_67_+ 35–67 688.00 35.43 0.58 100.0 SNORD114-9-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364409.1 ENST00000364409.1_68_90_+ 68–90 2240.00 17.74 1.88 100.0 Y_RNA.234-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000364451.1 ENST00000364451.1_1_95_+ 1–95 77.00 0.03 0.06 100.0 RNA5S9-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000364461.1 ENST00000364461.1_2_82_+ 2–82 5334.00 79.14 4.47 100.0 SNORD115-23-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000364543.1 ENST00000364543.1_1_39_+ 1–39 84.00 2.66 0.07 100.0 RNA5SP141-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000364687.1 ENST00000364687.1_34_67_+ 34–67 47.00 29.01 0.04 100.0 SNORD114-15-201 snoRNA hepatocyte (In vitro differentiated cells)