ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362723.1 ENST00000362723.1_3_71_+ 3–71 1314.00 94.33 1.10 100.0 SNORD114-14-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_35_70_+ 35–70 2618.00 7.66 2.19 100.0 SNORD104-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362883.1 ENST00000362883.1_10_70_+ 10–70 153.00 0.45 0.13 100.0 SNORD104-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362912.1 ENST00000362912.1_2_82_+ 2–82 15215.00 73.63 12.75 94.63 SNORD115-9-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362973.1 ENST00000362973.1_96_117_+ 96–117 254220.00 90.37 212.97 97.45 RNA5SP358-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000363124.1 ENST00000363124.1_17_32_+ 17–32 153.00 3.59 0.13 68.0 RNA5SP145-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000363182.1 ENST00000363182.1_1_32_+ 1–32 6.00 25.00 0.01 100.0 Y_RNA.105-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000363194.1 ENST00000363194.1_1_32_+ 1–32 2348.00 61.23 1.97 100.0 RNY4P9-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_55_116_+ 55–116 6261.00 44.75 5.25 100.0 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_63_116_+ 63–116 1104.00 7.89 0.92 100.0 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_69_+ 1–69 29.00 0.21 0.02 100.0 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_68_116_+ 68–116 112.00 0.80 0.09 100.0 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_78_+ 1–78 150.00 1.07 0.13 58.37 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363286.1 ENST00000363286.1_1_86_+ 1–86 4.00 0.03 0.00 100.0 RNU5B-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000363293.1 ENST00000363293.1_2_82_+ 2–82 73987.00 94.43 61.98 98.0 SNORD115-18-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_36_+ 1–36 9.00 0.47 0.01 64.29 RNY4P27-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000363341.1 ENST00000363341.1_1_32_+ 1–32 420.00 22.08 0.35 98.82 RNY4P27-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000363444.1 ENST00000363444.1_74_99_+ 74–99 700.00 15.44 0.59 100.0 Y_RNA.136-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000363608.1 ENST00000363608.1_2_82_+ 2–82 8381.00 75.20 7.02 100.0 SNORD115-41-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363633.1 ENST00000363633.1_2_82_+ 2–82 269.00 8.40 0.23 100.0 SNORD115-5-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363723.1 ENST00000363723.1_2_82_+ 2–82 2183.00 68.95 1.83 100.0 SNORD115-33-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363742.1 ENST00000363742.1_4_67_+ 4–67 2154.00 93.65 1.80 97.82 SNORD114-25-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363762.1 ENST00000363762.1_3_72_+ 3–72 2353.00 96.63 1.97 100.0 SNORD113-7-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363856.1 ENST00000363856.1_2_82_+ 2–82 3584.00 58.53 3.00 100.0 SNORD115-8-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000363872.1 ENST00000363872.1_74_98_+ 74–98 452.00 28.68 0.38 100.0 Y_RNA.181-201 misc RNA hepatocyte (In vitro differentiated cells)