ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000830954.1 ENST00000830954.1_968_989_+ 968–989 1247.00 91.96 1.04 100.0 MIR205HG-245 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 91.00 11.29 0.08 100.0 TAF12-DT-204 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 783982.00 97.14 656.79 99.73 ZFAS1-238 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 366.00 0.05 0.31 100.0 ZFAS1-238 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 627.00 0.08 0.53 100.0 ZFAS1-238 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 3551.00 0.44 2.97 100.0 ZFAS1-238 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 11555.00 6.24 9.68 100.0 ZFAS1-242 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 168112.00 90.75 140.84 100.0 ZFAS1-242 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 193.00 38.91 0.16 100.0 ENST00000837997 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 105.00 21.17 0.09 100.0 ENST00000837997 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 4246.00 63.65 3.56 73.46 ENST00000839036 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 119.00 0.61 0.10 100.0 ENST00000849527 lncRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 20089.00 60.69 16.83 91.07 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 4109.00 12.41 3.44 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 1335.00 0.12 1.12 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 767.00 20.84 0.64 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 2088.00 56.74 1.75 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 651.00 31.30 0.55 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 793.00 12.28 0.66 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 870.00 34.29 0.73 73.85 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 541.00 0.05 0.45 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 4.00 8.70 0.00 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 14993.00 17.80 12.56 87.14 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 235.00 0.28 0.20 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA hepatocyte (In vitro differentiated cells)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 25153.00 29.86 21.07 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA hepatocyte (In vitro differentiated cells)