ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000362400.1 ENST00000362400.1_17_95_+ 17–95 2609.27 0.34 2.19 64.06 RNA5S12-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000362415.1 ENST00000362415.1_74_100_+ 74–100 250.00 17.14 0.21 100.0 Y_RNA.14-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000362441.1 ENST00000362441.1_2_82_+ 2–82 2850.00 52.34 2.39 100.0 SNORD115-34-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362477.1 ENST00000362477.1_70_120_+ 70–120 48.00 6.66 0.04 100.0 RNU5E-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362545.1 ENST00000362545.1_1_85_+ 1–85 28.00 0.66 0.02 18.67 RNA5SP370-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000362607.1 ENST00000362607.1_1_25_+ 1–25 340.00 23.46 0.28 100.0 SNORA31-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_70_+ 1–70 224.00 5.28 0.19 100.0 RNA5SP389-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_53_+ 1–53 116.00 2.73 0.10 38.93 RNA5SP389-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_76_+ 1–76 8.00 0.19 0.01 100.0 RNA5SP389-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000362610.1 ENST00000362610.1_1_42_+ 1–42 103.00 2.43 0.09 64.38 RNA5SP389-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_60_116_+ 60–116 8075.00 12.88 6.76 79.25 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_72_116_+ 72–116 615.00 0.98 0.52 100.0 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_66_116_+ 66–116 1807.80 2.88 1.51 50.06 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_29_116_+ 29–116 10132.00 16.16 8.49 87.3 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_55_116_+ 55–116 3336.00 5.32 2.79 74.23 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_40_116_+ 40–116 632.00 1.01 0.53 100.0 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_36_116_+ 36–116 7082.00 11.30 5.93 82.02 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_63_116_+ 63–116 2224.00 3.55 1.86 40.98 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_22_116_+ 22–116 1455.75 2.32 1.22 61.84 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_52_116_+ 52–116 2628.00 4.19 2.20 58.9 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_1_78_+ 1–78 69.00 0.11 0.06 100.0 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_68_116_+ 68–116 2056.85 3.28 1.72 66.8 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_24_116_+ 24–116 1157.47 1.85 0.97 37.91 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_34_116_+ 34–116 2250.00 3.59 1.88 27.66 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000362698.1 ENST00000362698.1_47_116_+ 47–116 4566.00 7.28 3.83 73.74 RNU5A-1-201 snRNA hepatocyte (In vitro differentiated cells)