ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000640631.2 ENST00000640631.2_4125_4168_+ 4125–4168 791.00 0.12 0.66 100.0 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7389_7479_+ 7389–7479 7197.00 1.12 6.03 54.35 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_288_349_+ 288–349 21118.00 3.29 17.69 83.32 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_287_352_+ 287–352 9414.00 1.47 7.89 51.81 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000648813.1 ENST00000648813.1_104_120_+ 104–120 6211.08 2.30 5.20 45.9 5S_rRNA.20-201 rRNA pseudogene hepatocyte (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_3826_3892_+ 3826–3892 4990.00 12.98 4.18 100.0 HSPA9-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000649692.2 ENST00000649692.2_1755_1822_+ 1755–1822 20642.00 53.68 17.29 73.91 HSPA9-211 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650189.1 ENST00000650189.1_167_187_+ 167–187 43538.00 36.23 36.47 100.0 DNM3OS-205 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_363_440_+ 363–440 88634.00 3.27 74.25 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2858_2910_+ 2858–2910 1563.00 0.06 1.31 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_709_770_+ 709–770 3018.00 0.11 2.53 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1648_1723_+ 1648–1723 2465.00 0.09 2.07 79.46 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_137_198_+ 137–198 25532.00 0.94 21.39 89.36 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1391_1418_+ 1391–1418 471.00 0.02 0.39 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2663_+ 2631–2663 87.00 0.00 0.07 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1103_+ 1048–1103 3642.00 0.13 3.05 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1108_+ 1048–1108 1714567.00 63.26 1436.39 99.86 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1075_1108_+ 1075–1108 1684.00 0.06 1.41 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1424_1452_+ 1424–1452 12212.00 0.45 10.23 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1075_+ 1048–1075 2884.00 0.11 2.42 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_2631_2673_+ 2631–2673 2706.00 0.10 2.27 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1049_1079_+ 1049–1079 6493.00 0.24 5.44 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_157_198_+ 157–198 40.00 0.00 0.03 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_160_197_+ 160–197 537.00 0.02 0.45 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)
ENST00000650796.1 ENST00000650796.1_1048_1086_+ 1048–1086 1694.00 0.06 1.42 100.0 GAS5-230 retained intron hepatocyte (In vitro differentiated cells)