ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000617785.1 ENST00000617785.1_1_75_+ 1–75 1.00 0.00 0.00 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_22_116_+ 22–116 248.00 0.35 0.21 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_90_+ 1–90 219.92 0.31 0.18 57.72 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_92_+ 1–92 93.93 0.13 0.08 38.65 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000619225.1 ENST00000619225.1_155_188_+ 155–188 1544.00 2.38 1.29 100.0 U2.6-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_516_+ 499–516 156.00 0.69 0.13 74.64 ENST00000619323 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000619323.3 ENST00000619323.3_499_520_+ 499–520 21801.00 96.58 18.26 99.58 ENST00000619323 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000625402.1 ENST00000625402.1_2_49_+ 2–49 614.00 25.36 0.51 100.0 SCARNA4-202 scaRNA hepatocyte (In vitro differentiated cells)
ENST00000625572.1 ENST00000625572.1_23_92_+ 23–92 4822.00 44.74 4.04 100.0 ENST00000625572 miRNA hepatocyte (In vitro differentiated cells)
ENST00000628177.1 ENST00000628177.1_1_79_+ 1–79 58247.00 97.08 48.80 100.0 ENST00000628177 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000630615.1 ENST00000630615.1_10_70_+ 10–70 19067.00 95.65 15.97 100.0 ENST00000630615 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_1617_1632_+ 1617–1632 250.00 55.56 0.21 100.0 DMRT2-209 protein coding hepatocyte (In vitro differentiated cells)
ENST00000635183.1 ENST00000635183.1_323_334_+ 323–334 54.00 12.00 0.05 100.0 DMRT2-209 protein coding hepatocyte (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_38_65_+ 38–65 1230.00 15.94 1.03 100.0 SNORD98-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000636377.1 ENST00000636377.1_2_65_+ 2–65 5385.00 69.77 4.51 100.0 SNORD98-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3209_3232_+ 3209–3232 168898.60 63.72 141.50 66.07 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3393_+ 3371–3393 131.56 0.05 0.11 33.05 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_2902_2924_+ 2902–2924 12.00 0.00 0.01 100.0 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000636668.1 ENST00000636668.1_3371_3391_+ 3371–3391 231.74 0.09 0.19 58.23 MIR106AHG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_28_+ 1–28 52.00 8.48 0.04 100.0 MEG8-222 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000638012.2 ENST00000638012.2_1_70_+ 1–70 149.00 24.31 0.12 100.0 MEG8-222 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_7388_7482_+ 7388–7482 30335.00 4.73 25.41 95.16 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_4125_4215_+ 4125–4215 254408.00 39.68 213.13 95.52 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_9465_9551_+ 9465–9551 175574.00 27.39 147.09 100.0 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000640631.2 ENST00000640631.2_5267_5357_+ 5267–5357 90955.00 14.19 76.20 94.74 SNHG14-224 lncRNA hepatocyte (In vitro differentiated cells)