ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000609620.2 ENST00000609620.2_7_86_+ 7–86 40288.00 59.42 33.75 64.02 SNORD91A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000612171.2 ENST00000612171.2_4_25_+ 4–25 2059.00 44.63 1.72 95.28 MIR486-1-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1597_+ 1528–1597 171964.00 48.91 144.06 70.05 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1583_+ 1528–1583 2013.00 0.57 1.69 100.0 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1528_1555_+ 1528–1555 4629.00 1.32 3.88 100.0 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612233.1 ENST00000612233.1_1212_1282_+ 1212–1282 65150.00 18.53 54.58 77.68 NOP56-219 retained intron hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_83_+ 1–83 4211.00 15.28 3.53 63.75 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_81_123_+ 81–123 3194.81 11.59 2.68 63.64 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_50_+ 1–50 162.00 0.59 0.14 100.0 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_25_+ 1–25 3451.00 12.52 2.89 100.0 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_10_37_+ 10–37 70.00 0.25 0.06 100.0 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_1_81_+ 1–81 3615.00 13.12 3.03 46.19 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000612463.1 ENST00000612463.1_83_123_+ 83–123 1813.18 6.58 1.52 36.12 RNA5-8SN2-201 rRNA hepatocyte (In vitro differentiated cells)
ENST00000615835.1 ENST00000615835.1_56_79_+ 56–79 21.00 100.00 0.02 100.0 MIR7974-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000616574.2 ENST00000616574.2_44_64_+ 44–64 1.00 100.00 0.00 100.0 MIR376A1-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_155_187_+ 155–187 488.00 0.69 0.41 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_187_+ 93–187 1455.15 2.06 1.22 36.31 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_95_+ 1–95 47580.00 67.31 39.86 99.95 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_99_187_+ 99–187 6.00 0.01 0.01 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_87_+ 1–87 316.00 0.45 0.26 65.7 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_64_+ 1–64 206.00 0.29 0.17 46.4 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_1_70_+ 1–70 196.00 0.28 0.16 88.29 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_95_188_+ 95–188 2866.82 4.06 2.40 71.53 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_170_188_+ 170–188 1898.00 2.68 1.59 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000617785.1 ENST00000617785.1_93_116_+ 93–116 206.00 0.29 0.17 100.0 U2.3-201 snRNA hepatocyte (In vitro differentiated cells)