ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000391007.1 ENST00000391007.1_9_77_+ 9–77 14846.00 81.72 12.44 100.0 SNORD70B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391107.1 ENST00000391107.1_62_87_+ 62–87 5805.00 71.62 4.86 92.67 RNY4P18-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_97_+ 18–97 92368.00 85.27 77.38 100.0 SNORD90-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391145.1 ENST00000391145.1_18_100_+ 18–100 12014.00 11.09 10.06 61.91 SNORD90-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_35_+ 9–35 1467.00 0.77 1.23 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_69_+ 9–69 178766.00 94.10 149.76 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_35_69_+ 35–69 3054.00 1.61 2.56 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391150.1 ENST00000391150.1_9_48_+ 9–48 2273.00 1.20 1.90 100.0 SNORD69-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000391232.1 ENST00000391232.1_9_80_+ 9–80 14483.00 56.61 12.13 61.8 SNORD70-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_7988_8016_+ 7988–8016 744.00 4.49 0.62 100.0 B4GALNT2-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000393354.7 ENST00000393354.7_8003_8016_+ 8003–8016 10976.00 66.24 9.20 82.95 B4GALNT2-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000396355.5 ENST00000396355.5_35_56_+ 35–56 2680.00 89.63 2.25 100.0 NDE1-202 protein coding hepatocyte (In vitro differentiated cells)
ENST00000401172.1 ENST00000401172.1_46_67_+ 46–67 5.00 100.00 0.00 100.0 MIR208B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000401182.3 ENST00000401182.3_11_31_+ 11–31 355.00 57.82 0.30 100.0 MIR450B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000401258.3 ENST00000401258.3_48_71_+ 48–71 1101.00 59.77 0.92 100.0 MIR887-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000401280.3 ENST00000401280.3_49_69_+ 49–69 141.00 93.38 0.12 100.0 MIR889-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408139.1 ENST00000408139.1_5_91_+ 5–91 7660.00 84.65 6.42 100.0 SNORD111-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408314.1 ENST00000408314.1_5_86_+ 5–86 5471.00 72.00 4.58 89.29 SNORD88A-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408406.1 ENST00000408406.1_32_53_+ 32–53 147.00 96.08 0.12 100.0 MIR548K-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408479.1 ENST00000408479.1_72_91_+ 72–91 446.00 59.55 0.37 100.0 MIR320B2-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408537.1 ENST00000408537.1_15_35_+ 15–35 198.00 93.40 0.17 100.0 MIR1271-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_26_71_+ 26–71 1543.00 0.52 1.29 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_71_+ 4–71 284925.00 95.36 238.70 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_36_+ 4–36 4237.00 1.42 3.55 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000408573.1 ENST00000408573.1_4_52_+ 4–52 1049.00 0.35 0.88 100.0 SNORD100-201 snoRNA hepatocyte (In vitro differentiated cells)