ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000387459.1 ENST00000387459.1_1_69_+ 1–69 193977.00 73.84 162.51 86.5 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_1_62_+ 1–62 3594.00 1.37 3.01 78.37 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_24_69_+ 24–69 35.00 0.01 0.03 100.0 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_40_67_+ 40–67 1654.00 0.63 1.39 80.29 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_39_69_+ 39–69 406.00 0.15 0.34 25.47 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000387459.1 ENST00000387459.1_1_57_+ 1–57 1558.00 0.59 1.31 100.0 MT-TE-201 Mt tRNA hepatocyte (In vitro differentiated cells)
ENST00000388006.1 ENST00000388006.1_7_28_+ 7–28 254.00 64.14 0.21 100.0 MIR196A1-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_316_354_+ 316–354 49031.00 53.81 41.08 100.0 MT-RNR1-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000389680.2 ENST00000389680.2_2_90_+ 2–90 4821.00 5.29 4.04 100.0 MT-RNR1-201 Mt rRNA hepatocyte (In vitro differentiated cells)
ENST00000390180.1 ENST00000390180.1_64_86_+ 64–86 732.00 74.77 0.61 100.0 MIR454-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390204.1 ENST00000390204.1_51_72_+ 51–72 2127.00 54.61 1.78 100.0 MIR501-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390225.1 ENST00000390225.1_30_51_+ 30–51 4973.00 90.11 4.17 100.0 MIR769-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390689.3 ENST00000390689.3_37_51_+ 37–51 549.00 86.46 0.46 100.0 KRTAP19-1-201 protein coding hepatocyte (In vitro differentiated cells)
ENST00000390708.1 ENST00000390708.1_11_33_+ 11–33 277.00 26.16 0.23 100.0 MIR708-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390725.1 ENST00000390725.1_44_66_+ 44–66 2963.00 88.87 2.48 100.0 MIR509-3-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390751.3 ENST00000390751.3_47_68_+ 47–68 2.00 28.57 0.00 100.0 MIR543-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390813.1 ENST00000390813.1_45_67_+ 45–67 1430.00 95.59 1.20 100.0 MIR301B-201 miRNA hepatocyte (In vitro differentiated cells)
ENST00000390851.1 ENST00000390851.1_150_165_+ 150–165 408.00 46.36 0.34 69.51 RNU1-82P-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_59_+ 1–59 732.00 3.96 0.61 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_1_75_+ 1–75 4829.00 26.12 4.05 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_25_76_+ 25–76 1971.00 10.66 1.65 100.0 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390856.1 ENST00000390856.1_48_74_+ 48–74 4439.00 24.01 3.72 83.66 SNORD66-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390880.2 ENST00000390880.2_45_67_+ 45–67 469.00 74.80 0.39 100.0 U3.17-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390930.1 ENST00000390930.1_207_235_+ 207–235 4640.00 59.61 3.89 100.0 SNORD17-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000390994.1 ENST00000390994.1_6_74_+ 6–74 3083.00 74.56 2.58 100.0 SNORD72-201 snoRNA hepatocyte (In vitro differentiated cells)