ENCFF518LYU

Library Details

Organism: Homo Sapiens
Biosample: hepatocyte (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR673PND
Description: Part of ENCODE experiment ENCSR673PND. The libraries contained in this experiment come from H9-derived embryonic stem cells that were differentiated down a hepatocytic pathway. They are stranded SE101 length reads from rRNA-depleted Total RNA <200 nucleotides in size that was pretreated with Tobacco Acid Pyrophosphatase prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000408587.1 ENST00000408587.1_43_74_+ 43–74 2871.00 42.95 2.41 100.0 SNORD111B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_155_188_+ 155–188 856.00 16.67 0.72 100.0 RNU2-36P-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000410361.1 ENST00000410361.1_79_116_+ 79–116 231.00 4.50 0.19 100.0 RNU2-36P-201 snRNA hepatocyte (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_33_65_+ 33–65 1630.00 0.60 1.37 100.0 SNORD19C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410413.1 ENST00000410413.1_2_65_+ 2–65 263225.00 97.42 220.52 99.17 SNORD19C-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_84_+ 7–84 463475.00 93.83 388.28 98.27 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_7_54_+ 7–54 12677.00 2.57 10.62 100.0 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410433.1 ENST00000410433.1_31_84_+ 31–84 1061.00 0.21 0.89 100.0 SNORD12B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000410669.1 ENST00000410669.1_1_32_+ 1–32 7.00 0.70 0.01 100.0 Y_RNA.609-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000410717.1 ENST00000410717.1_15_31_+ 15–31 139.00 25.79 0.12 100.0 Y_RNA.612-201 misc RNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_51_79_+ 51–79 543.00 0.09 0.45 100.0 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_7_79_+ 7–79 591318.00 97.71 495.38 99.42 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000411292.1 ENST00000411292.1_6_82_+ 6–82 6988.00 1.15 5.85 100.0 SNORD71-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1985_2007_+ 1985–2007 448655.00 22.36 375.86 65.33 MIR194-2HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000413053.2 ENST00000413053.2_1984_2004_+ 1984–2004 1493451.00 74.42 1251.15 91.39 MIR194-2HG-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000415386.2 ENST00000415386.2_302_374_+ 302–374 794.00 9.65 0.67 100.0 LINC01783-201 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000415804.2 ENST00000415804.2_467_487_+ 467–487 147.00 95.45 0.12 100.0 RPS7P15-201 processed pseudogene hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_58_86_+ 58–86 262.00 1.61 0.22 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_72_86_+ 72–86 94.00 0.58 0.08 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_35_+ 1–35 5111.00 31.34 4.28 94.56 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_1_86_+ 1–86 6326.00 38.79 5.30 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000426867.1 ENST00000426867.1_26_86_+ 26–86 1079.00 6.62 0.90 100.0 SNORD62B-201 snoRNA hepatocyte (In vitro differentiated cells)
ENST00000432845.1 ENST00000432845.1_2382_2409_+ 2382–2409 166.00 92.22 0.14 100.0 MRPL32-203 nonsense mediated decay hepatocyte (In vitro differentiated cells)
ENST00000436739.2 ENST00000436739.2_403_416_+ 403–416 14.00 56.00 0.01 100.0 ENST00000436739 lncRNA hepatocyte (In vitro differentiated cells)
ENST00000437139.7 ENST00000437139.7_1182_1238_+ 1182–1238 885.00 5.06 0.74 77.16 TMEM107-204 protein coding hepatocyte (In vitro differentiated cells)