ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 2940.00 24.16 11.62 93.24 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 1125.00 9.24 4.45 67.2 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 3204.00 72.19 12.67 100.0 ODAD3-204 nonsense mediated decay esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 2373.00 3.96 9.38 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 316.00 0.53 1.25 100.0 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 43922.00 73.25 173.62 80.91 VMP1-217 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 671.00 0.05 2.65 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_318_+ 236–318 687884.24 53.84 2719.18 57.62 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_320_+ 236–320 572063.28 44.78 2261.34 45.24 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_330_+ 236–330 3094.00 0.24 12.23 90.36 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 142.00 0.01 0.56 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000595794.5 ENST00000595794.5_230_318_+ 230–318 4.00 0.00 0.02 100.0 C19orf48P-203 retained intron esophagus squamous epithelium (Tissue)
ENST00000597420.2 ENST00000597420.2_241_263_+ 241–263 1.00 100.00 0.00 100.0 ENST00000597420 lncRNA esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_434_519_+ 434–519 193.00 13.76 0.76 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000600027.5 ENST00000600027.5_441_519_+ 441–519 317.00 22.59 1.25 100.0 RPS11-206 retained intron esophagus squamous epithelium (Tissue)
ENST00000602315.3 ENST00000602315.3_752_771_+ 752–771 1833746.00 82.44 7248.72 83.48 CARMN-209 lncRNA esophagus squamous epithelium (Tissue)
ENST00000602478.2 ENST00000602478.2_671_758_+ 671–758 3026.00 58.95 11.96 100.0 ENST00000602478 lncRNA esophagus squamous epithelium (Tissue)
ENST00000604535.1 ENST00000604535.1_1396_1410_+ 1396–1410 978.00 48.42 3.87 100.0 PPFIA1P1-201 processed pseudogene esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_4_67_+ 4–67 282.00 35.25 1.11 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606412.1 ENST00000606412.1_35_67_+ 35–67 378.00 47.25 1.49 100.0 SNORD114-21-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606510.1 ENST00000606510.1_2_82_+ 2–82 34.00 46.58 0.13 100.0 SNORD115-40-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000606724.1 ENST00000606724.1_22_43_+ 22–43 2578.00 96.84 10.19 100.0 MIR98-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000607261.1 ENST00000607261.1_3_73_+ 3–73 869.00 88.31 3.44 100.0 SNORD113-5-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000607334.3 ENST00000607334.3_14_34_+ 14–34 181.00 83.80 0.72 100.0 MIR15A-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000607441.3 ENST00000607441.3_43_63_+ 43–63 5.00 62.50 0.02 100.0 MIR376C-201 miRNA esophagus squamous epithelium (Tissue)