ENCFF510IHL

Library Details

Organism: Homo Sapiens
Biosample: esophagus squamous epithelium (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR779BVZ
Description: Part of ENCODE experiment ENCSR779BVZ. The libraries contained in this Experiment come from tissue sub-sections of a 51 year old female's esophagus mucosa tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 395.63 0.15 1.56 43.43 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 161575.00 63.02 638.70 78.83 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 91755.00 35.79 362.70 92.81 RPL23A-208 retained intron esophagus squamous epithelium (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 22.00 4.87 0.09 100.0 MIR133A1HG-202 lncRNA esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 1998.00 2.63 7.90 55.76 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 3376.00 4.44 13.35 29.8 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 129.00 0.17 0.51 100.0 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 51344.00 67.60 202.96 98.61 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 13247.00 17.44 52.36 97.55 RPL17-211 retained intron esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 3.00 17.65 0.01 30.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 3.00 17.65 0.01 100.0 ENST00000582320 lncRNA esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 2671.00 13.14 10.56 100.0 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 8440.70 41.51 33.37 56.03 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 7117.97 35.01 28.14 44.38 RPL17-214 retained intron esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_27_62_+ 27–62 3.00 0.00 0.01 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 626657.00 99.35 2477.15 99.9 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 37.00 0.01 0.15 100.0 SNORD43-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 58.00 42.65 0.23 100.0 MIR151B-201 miRNA esophagus squamous epithelium (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 300.00 2.72 1.19 100.0 SNORD3A-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585078.1 ENST00000585078.1_1_83_+ 1–83 3115.00 75.59 12.31 100.0 SNORD92-201 snoRNA esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 2427.00 33.52 9.59 100.0 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 3840.00 53.03 15.18 89.34 NSRP1-214 protein coding esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6337_6420_+ 6337–6420 727.00 5.97 2.87 100.0 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1606.00 13.20 6.35 92.56 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 3465.00 28.47 13.70 85.16 MIR23AHG-201 lncRNA esophagus squamous epithelium (Tissue)