ENCFF503PBD

Library Details

Organism: Homo Sapiens
Biosample: mesendoderm (In vitro differentiated cells)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR494ATA
Description: Part of ENCODE experiment ENCSR494ATA.
Author: Joe Ecker, Salk

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000467105.1 ENST00000467105.1_582_665_+ 582–665 2.00 0.08 0.02 100.0 RPL3-212 retained intron mesendoderm (In vitro differentiated cells)
ENST00000469129.1 ENST00000469129.1_822_842_+ 822–842 65734.00 97.45 623.25 100.0 SMC1A-204 retained intron mesendoderm (In vitro differentiated cells)
ENST00000471759.5 ENST00000471759.5_372_449_+ 372–449 192.00 3.24 1.82 100.0 RABGGTB-208 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_862_898_+ 862–898 339.00 32.50 3.21 100.0 DDX39B-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000481456.1 ENST00000481456.1_847_901_+ 847–901 139.00 13.33 1.32 100.0 DDX39B-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000484599.1 ENST00000484599.1_580_645_+ 580–645 78.00 3.58 0.74 100.0 RPS8-206 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_392_433_+ 392–433 854.00 62.20 8.10 100.0 RPL13-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000484610.5 ENST00000484610.5_361_433_+ 361–433 9.00 0.66 0.09 100.0 RPL13-207 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_408_+ 343–408 8249.00 12.87 78.21 76.62 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_376_+ 343–376 4109.00 6.41 38.96 100.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_405_+ 365–405 5964.00 9.30 56.55 91.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_362_405_+ 362–405 320.00 0.50 3.03 25.93 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_360_408_+ 360–408 486.00 0.76 4.61 91.87 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_400_+ 343–400 1978.00 3.09 18.75 96.35 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_393_+ 343–393 3865.00 6.03 36.65 54.63 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_413_+ 343–413 5.00 0.01 0.05 100.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_405_+ 343–405 16564.00 25.84 157.05 98.34 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_418_+ 343–418 17.00 0.03 0.16 100.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_365_408_+ 365–408 3380.00 5.27 32.05 67.82 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_2108_2152_+ 2108–2152 48.00 0.07 0.46 100.0 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_348_405_+ 348–405 50.00 0.08 0.47 21.93 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485101.5 ENST00000485101.5_343_390_+ 343–390 6650.00 10.37 63.05 82.03 EIF4A2-219 retained intron mesendoderm (In vitro differentiated cells)
ENST00000485390.5 ENST00000485390.5_230_303_+ 230–303 78.00 11.89 0.74 100.0 RPS8-207 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 2615.00 53.42 24.79 100.0 RPL7A-206 protein coding CDS not defined mesendoderm (In vitro differentiated cells)
ENST00000485706.5 ENST00000485706.5_486_524_+ 486–524 871.00 17.79 8.26 100.0 RPL7A-206 protein coding CDS not defined mesendoderm (In vitro differentiated cells)