ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000668048.2 ENST00000668048.2_523_570_+ 523–570 493.00 0.02 0.98 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_847_874_+ 847–874 57.00 0.00 0.11 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_523_549_+ 523–549 783.00 0.02 1.56 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_523_584_+ 523–584 1093.00 0.03 2.18 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_287_322_+ 287–322 506.00 0.02 1.01 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_2157_2173_+ 2157–2173 26282.00 0.81 52.33 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_258_296_+ 258–296 218.00 0.01 0.43 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_2184_2223_+ 2184–2223 1353.00 0.04 2.69 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_258_324_+ 258–324 60974.00 1.87 121.41 87.1 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_524_594_+ 524–594 3657.00 0.11 7.28 87.24 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_2514_2560_+ 2514–2560 56.00 0.00 0.11 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_1936_1982_+ 1936–1982 225.00 0.01 0.45 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_1953_1982_+ 1953–1982 9976.00 0.31 19.86 72.73 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_523_579_+ 523–579 1224.96 0.04 2.44 29.7 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_565_594_+ 565–594 795.00 0.02 1.58 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_1949_1982_+ 1949–1982 11027.00 0.34 21.96 59.47 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_2160_2223_+ 2160–2223 1158.00 0.04 2.31 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668048.2 ENST00000668048.2_1921_1978_+ 1921–1978 1916.00 0.06 3.81 100.0 SNHG1-248 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1340_+ 1278–1340 1149.00 3.81 2.29 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1322_+ 1278–1322 5097.00 16.89 10.15 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1351_+ 1278–1351 289.96 0.96 0.58 84.54 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1337_+ 1278–1337 852.00 2.82 1.70 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1033_+ 988–1033 586.00 1.94 1.17 100.0 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_1278_1353_+ 1278–1353 57.54 0.19 0.11 16.78 SNHG5-273 lncRNA Peyer's patch (Tissue)
ENST00000668505.1 ENST00000668505.1_988_1056_+ 988–1056 7567.00 25.07 15.07 99.76 SNHG5-273 lncRNA Peyer's patch (Tissue)