ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000565907.1 ENST00000565907.1_307_354_+ 307–354 3723.00 31.55 7.41 100.0 RBMX-210 retained intron Peyer's patch (Tissue)
ENST00000565907.1 ENST00000565907.1_307_381_+ 307–381 18.00 0.15 0.04 4.74 RBMX-210 retained intron Peyer's patch (Tissue)
ENST00000567229.5 ENST00000567229.5_1097_1162_+ 1097–1162 369.00 31.11 0.73 100.0 RPL4-214 retained intron Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_61_96_+ 61–96 1772.81 18.26 3.53 25.83 POLG-DT-202 lncRNA Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_59_96_+ 59–96 5374.83 55.37 10.70 81.06 POLG-DT-202 lncRNA Peyer's patch (Tissue)
ENST00000569473.1 ENST00000569473.1_47_96_+ 47–96 25.00 0.26 0.05 100.0 POLG-DT-202 lncRNA Peyer's patch (Tissue)
ENST00000570843.1 ENST00000570843.1_7_38_+ 7–38 504.00 34.62 1.00 100.0 ENST00000570843 lncRNA Peyer's patch (Tissue)
ENST00000572453.1 ENST00000572453.1_1973_1994_+ 1973–1994 853.00 81.32 1.70 100.0 MIR497HG-207 lncRNA Peyer's patch (Tissue)
ENST00000577164.2 ENST00000577164.2_444_465_+ 444–465 6928.00 93.57 13.79 95.77 MIR22HG-212 lncRNA Peyer's patch (Tissue)
ENST00000577887.1 ENST00000577887.1_1_51_+ 1–51 218.00 41.13 0.43 50.0 SNORD53B-201 snoRNA Peyer's patch (Tissue)
ENST00000577887.1 ENST00000577887.1_1_53_+ 1–53 218.00 41.13 0.43 50.0 SNORD53B-201 snoRNA Peyer's patch (Tissue)
ENST00000578036.5 ENST00000578036.5_3605_3616_+ 3605–3616 97.00 74.62 0.19 100.0 ENST00000578036 lncRNA Peyer's patch (Tissue)
ENST00000578181.1 ENST00000578181.1_477_541_+ 477–541 643.00 79.19 1.28 100.0 RPL23A-207 protein coding Peyer's patch (Tissue)
ENST00000578242.1 ENST00000578242.1_11_31_+ 11–31 177.00 96.72 0.35 100.0 MIR744-201 miRNA Peyer's patch (Tissue)
ENST00000578683.1 ENST00000578683.1_11_30_+ 11–30 69.00 63.30 0.14 100.0 MIR378C-201 miRNA Peyer's patch (Tissue)
ENST00000579003.2 ENST00000579003.2_1219_1238_+ 1219–1238 1542.00 88.47 3.07 91.24 MIR142HG-201 lncRNA Peyer's patch (Tissue)
ENST00000579003.2 ENST00000579003.2_1257_1279_+ 1257–1279 6.00 0.34 0.01 100.0 MIR142HG-201 lncRNA Peyer's patch (Tissue)
ENST00000579003.2 ENST00000579003.2_1221_1241_+ 1221–1241 1.00 0.06 0.00 0.3 MIR142HG-201 lncRNA Peyer's patch (Tissue)
ENST00000580755.1 ENST00000580755.1_131_197_+ 131–197 2020.22 0.07 4.02 53.9 RPL23A-208 retained intron Peyer's patch (Tissue)
ENST00000580755.1 ENST00000580755.1_131_199_+ 131–199 1679.91 0.06 3.34 55.72 RPL23A-208 retained intron Peyer's patch (Tissue)
ENST00000580755.1 ENST00000580755.1_132_190_+ 132–190 2298138.00 78.30 4575.85 87.11 RPL23A-208 retained intron Peyer's patch (Tissue)
ENST00000580755.1 ENST00000580755.1_131_193_+ 131–193 622022.00 21.19 1238.52 93.26 RPL23A-208 retained intron Peyer's patch (Tissue)
ENST00000581072.6 ENST00000581072.6_810_831_+ 810–831 10.00 9.17 0.02 100.0 MIR133A1HG-202 lncRNA Peyer's patch (Tissue)
ENST00000581305.1 ENST00000581305.1_509_570_+ 509–570 8333.00 7.00 16.59 57.4 RPL17-211 retained intron Peyer's patch (Tissue)
ENST00000581305.1 ENST00000581305.1_127_189_+ 127–189 16034.00 13.46 31.93 64.1 RPL17-211 retained intron Peyer's patch (Tissue)