ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000581305.1 ENST00000581305.1_127_196_+ 127–196 322.00 0.27 0.64 100.0 RPL17-211 retained intron Peyer's patch (Tissue)
ENST00000581305.1 ENST00000581305.1_127_192_+ 127–192 51897.00 43.58 103.33 94.16 RPL17-211 retained intron Peyer's patch (Tissue)
ENST00000581305.1 ENST00000581305.1_509_573_+ 509–573 37707.00 31.66 75.08 93.26 RPL17-211 retained intron Peyer's patch (Tissue)
ENST00000582320.4 ENST00000582320.4_575_597_+ 575–597 2.00 7.69 0.00 33.33 ENST00000582320 lncRNA Peyer's patch (Tissue)
ENST00000582320.4 ENST00000582320.4_395_417_+ 395–417 1.00 3.85 0.00 100.0 ENST00000582320 lncRNA Peyer's patch (Tissue)
ENST00000582320.4 ENST00000582320.4_575_600_+ 575–600 1.00 3.85 0.00 100.0 ENST00000582320 lncRNA Peyer's patch (Tissue)
ENST00000582588.1 ENST00000582588.1_258_286_+ 258–286 8248.00 23.42 16.42 100.0 RPL17-214 retained intron Peyer's patch (Tissue)
ENST00000582588.1 ENST00000582588.1_258_318_+ 258–318 13162.64 37.38 26.21 55.25 RPL17-214 retained intron Peyer's patch (Tissue)
ENST00000582588.1 ENST00000582588.1_258_320_+ 258–320 12174.45 34.57 24.24 47.9 RPL17-214 retained intron Peyer's patch (Tissue)
ENST00000583861.1 ENST00000583861.1_1_62_+ 1–62 193670.00 98.51 385.62 99.95 SNORD43-201 snoRNA Peyer's patch (Tissue)
ENST00000583861.1 ENST00000583861.1_12_62_+ 12–62 69.00 0.04 0.14 100.0 SNORD43-201 snoRNA Peyer's patch (Tissue)
ENST00000584249.1 ENST00000584249.1_60_79_+ 60–79 30.00 30.30 0.06 100.0 MIR151B-201 miRNA Peyer's patch (Tissue)
ENST00000584923.1 ENST00000584923.1_153_216_+ 153–216 240.00 4.68 0.48 100.0 SNORD3A-201 snoRNA Peyer's patch (Tissue)
ENST00000585881.5 ENST00000585881.5_140_162_+ 140–162 1814.00 35.40 3.61 100.0 NSRP1-214 protein coding Peyer's patch (Tissue)
ENST00000585881.5 ENST00000585881.5_104_126_+ 104–126 2414.00 47.10 4.81 84.32 NSRP1-214 protein coding Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6314_6334_+ 6314–6334 1068.00 31.07 2.13 98.61 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6462_6481_+ 6462–6481 233.00 6.78 0.46 87.59 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6638_+ 6619–6638 1046.00 30.43 2.08 88.42 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000587762.2 ENST00000587762.2_6619_6641_+ 6619–6641 619.00 18.01 1.23 80.29 MIR23AHG-201 lncRNA Peyer's patch (Tissue)
ENST00000591345.5 ENST00000591345.5_1414_1429_+ 1414–1429 143.00 43.73 0.28 100.0 ODAD3-204 nonsense mediated decay Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3381_3401_+ 3381–3401 75.00 0.90 0.15 100.0 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3402_+ 3343–3402 61.00 0.73 0.12 100.0 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000592790.1 ENST00000592790.1_3343_3366_+ 3343–3366 5921.00 71.23 11.79 77.82 VMP1-217 retained intron Peyer's patch (Tissue)
ENST00000595794.5 ENST00000595794.5_236_279_+ 236–279 1142.00 31.79 2.27 100.0 C19orf48P-203 retained intron Peyer's patch (Tissue)
ENST00000595794.5 ENST00000595794.5_236_276_+ 236–276 177.00 4.93 0.35 100.0 C19orf48P-203 retained intron Peyer's patch (Tissue)