ENCFF495VAK

Library Details

Organism: Homo Sapiens
Biosample: Peyer's patch (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR718AXQ
Description: Part of ENCODE experiment ENCSR718AXQ. The libraries contained in this Experiment come from tissue sub-sections of a 53 year old female's ileum tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000485706.5 ENST00000485706.5_456_485_+ 456–485 133.00 11.91 0.26 100.0 RPL7A-206 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000485756.1 ENST00000485756.1_122_192_+ 122–192 14887.00 8.17 29.64 95.99 RPL21-209 retained intron Peyer's patch (Tissue)
ENST00000485756.1 ENST00000485756.1_138_189_+ 138–189 220.00 0.12 0.44 100.0 RPL21-209 retained intron Peyer's patch (Tissue)
ENST00000485756.1 ENST00000485756.1_123_189_+ 123–189 161210.00 88.48 320.99 93.54 RPL21-209 retained intron Peyer's patch (Tissue)
ENST00000485756.1 ENST00000485756.1_173_189_+ 173–189 4.00 0.00 0.01 100.0 RPL21-209 retained intron Peyer's patch (Tissue)
ENST00000485756.1 ENST00000485756.1_123_168_+ 123–168 3592.00 1.97 7.15 100.0 RPL21-209 retained intron Peyer's patch (Tissue)
ENST00000486255.1 ENST00000486255.1_1073_1096_+ 1073–1096 47.00 44.76 0.09 100.0 GABRE-209 retained intron Peyer's patch (Tissue)
ENST00000488946.1 ENST00000488946.1_844_886_+ 844–886 9.00 0.14 0.02 100.0 RPL13A-212 retained intron Peyer's patch (Tissue)
ENST00000488946.1 ENST00000488946.1_197_235_+ 197–235 273.00 4.26 0.54 100.0 RPL13A-212 retained intron Peyer's patch (Tissue)
ENST00000488946.1 ENST00000488946.1_1095_1159_+ 1095–1159 270.00 4.22 0.54 100.0 RPL13A-212 retained intron Peyer's patch (Tissue)
ENST00000489392.1 ENST00000489392.1_151_191_+ 151–191 348.00 22.55 0.69 100.0 RPL7A-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000489392.1 ENST00000489392.1_151_188_+ 151–188 390.00 25.28 0.78 100.0 RPL7A-207 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000493449.5 ENST00000493449.5_96_109_+ 96–109 607.00 86.34 1.21 100.0 RGS11-208 retained intron Peyer's patch (Tissue)
ENST00000494697.5 ENST00000494697.5_306_348_+ 306–348 21686.00 81.88 43.18 93.44 NOP56-217 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_471_517_+ 471–517 373.00 1.40 0.74 52.83 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_505_553_+ 505–553 2394.00 9.01 4.77 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2126_+ 2059–2126 11504.00 43.27 22.91 88.01 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_471_515_+ 471–515 333.00 1.25 0.66 47.17 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_2059_2091_+ 2059–2091 440.00 1.66 0.88 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496055.5 ENST00000496055.5_493_553_+ 493–553 1884.00 7.09 3.75 100.0 RABGGTB-213 protein coding CDS not defined Peyer's patch (Tissue)
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 516.00 16.58 1.03 100.0 GNL3-211 retained intron Peyer's patch (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 2220.00 71.34 4.42 100.0 GNL3-211 retained intron Peyer's patch (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 55.00 28.80 0.11 100.0 RPL5-205 retained intron Peyer's patch (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 15.00 0.72 0.03 100.0 ZBED9-AS1-201 lncRNA Peyer's patch (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1432.00 88.40 2.85 100.0 RPS3A-206 retained intron Peyer's patch (Tissue)