ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000496254.5 ENST00000496254.5_774_811_+ 774–811 425.00 9.43 2.66 100.0 GNL3-211 retained intron testis (Tissue)
ENST00000496254.5 ENST00000496254.5_747_811_+ 747–811 3740.00 83.00 23.43 100.0 GNL3-211 retained intron testis (Tissue)
ENST00000497519.1 ENST00000497519.1_681_708_+ 681–708 660.00 78.48 4.14 100.0 RPL5-205 retained intron testis (Tissue)
ENST00000499525.1 ENST00000499525.1_506_558_+ 506–558 59.00 2.53 0.37 100.0 ZBED9-AS1-201 lncRNA testis (Tissue)
ENST00000507485.1 ENST00000507485.1_1149_1210_+ 1149–1210 1867.00 89.46 11.70 100.0 RPS3A-206 retained intron testis (Tissue)
ENST00000509578.1 ENST00000509578.1_1330_1389_+ 1330–1389 8013.00 97.71 50.21 100.0 COX7C-203 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_241_308_+ 241–308 4787.09 9.57 30.00 28.27 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_241_306_+ 241–306 24829.73 49.65 155.58 84.42 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_263_305_+ 263–305 4741.00 9.48 29.71 100.0 RACK1-229 protein coding testis (Tissue)
ENST00000513027.3 ENST00000513027.3_272_305_+ 272–305 11372.00 22.74 71.26 99.87 RACK1-229 protein coding testis (Tissue)
ENST00000513060.5 ENST00000513060.5_713_786_+ 713–786 3.00 0.12 0.02 15.0 RACK1-230 retained intron testis (Tissue)
ENST00000513060.5 ENST00000513060.5_712_783_+ 712–783 436.00 16.79 2.73 100.0 RACK1-230 retained intron testis (Tissue)
ENST00000515961.1 ENST00000515961.1_38_58_+ 38–58 33.00 2.94 0.21 100.0 RNA5SP486-201 rRNA pseudogene testis (Tissue)
ENST00000516201.1 ENST00000516201.1_1_30_+ 1–30 2717.00 90.33 17.02 100.0 SCARNA5-201 scaRNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_15_32_+ 15–32 8.00 0.05 0.05 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_32_+ 1–32 3358.00 22.35 21.04 94.3 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_48_93_+ 48–93 8870.00 59.03 55.58 99.62 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_17_+ 1–17 118.00 0.79 0.74 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_39_+ 1–39 83.00 0.55 0.52 62.88 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_67_93_+ 67–93 303.00 2.02 1.90 54.79 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_41_93_+ 41–93 58.00 0.39 0.36 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_36_+ 1–36 549.00 3.65 3.44 73.01 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_26_+ 1–26 17.00 0.11 0.11 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_1_48_+ 1–48 34.00 0.23 0.21 100.0 RNY4-201 misc RNA testis (Tissue)
ENST00000516507.1 ENST00000516507.1_54_93_+ 54–93 18.00 0.12 0.11 43.9 RNY4-201 misc RNA testis (Tissue)