ENCFF478BJL

Library Details

Organism: Homo Sapiens
Biosample: testis (Tissue)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR229WIW
Description: Part of ENCODE experiment ENCSR229WIW. The libraries contained in this Experiment come from tissue sub-sections of a 37 year old male's testis tissue section obtained from GTEx. They are stranded PE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000517927.2 ENST00000517927.2_384_405_+ 384–405 214.00 75.09 1.34 80.45 MIR3142HG-201 lncRNA testis (Tissue)
ENST00000521276.3 ENST00000521276.3_47_68_+ 47–68 14726.00 77.19 92.27 88.6 MIR151A-201 miRNA testis (Tissue)
ENST00000521276.3 ENST00000521276.3_11_31_+ 11–31 2143.00 11.23 13.43 100.0 MIR151A-201 miRNA testis (Tissue)
ENST00000523308.5 ENST00000523308.5_614_626_+ 614–626 657.00 98.35 4.12 100.0 DENND3-221 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_50_116_+ 50–116 1826.00 6.61 11.44 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_78_116_+ 78–116 1207.00 4.37 7.56 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_90_116_+ 90–116 621.00 2.25 3.89 61.3 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_155_187_+ 155–187 170.00 0.61 1.07 100.0 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_88_116_+ 88–116 392.00 1.42 2.46 38.7 WDR74-204 protein coding testis (Tissue)
ENST00000525239.5 ENST00000525239.5_93_116_+ 93–116 3678.00 13.31 23.05 73.63 WDR74-204 protein coding testis (Tissue)
ENST00000530422.1 ENST00000530422.1_78_109_+ 78–109 1863.00 37.61 11.67 100.0 SCARNA9-201 lncRNA testis (Tissue)
ENST00000530769.5 ENST00000530769.5_2551_2618_+ 2551–2618 29879.00 96.80 187.22 100.0 TAF1D-215 retained intron testis (Tissue)
ENST00000532091.1 ENST00000532091.1_1164_1221_+ 1164–1221 4.00 0.52 0.03 100.0 HSPA8-215 retained intron testis (Tissue)
ENST00000548801.1 ENST00000548801.1_2334_2355_+ 2334–2355 4978.00 71.49 31.19 78.5 ENST00000548801 lncRNA testis (Tissue)
ENST00000554988.2 ENST00000554988.2_275_334_+ 275–334 1297.00 29.11 8.13 100.0 ENST00000554988 lncRNA testis (Tissue)
ENST00000554988.2 ENST00000554988.2_275_320_+ 275–320 67.00 1.50 0.42 100.0 ENST00000554988 lncRNA testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4525_4590_+ 4525–4590 1702.00 3.22 10.66 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4551_4587_+ 4551–4587 236.00 0.45 1.48 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_4526_4587_+ 4526–4587 48826.00 92.51 305.94 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000557108.6 ENST00000557108.6_1419_1490_+ 1419–1490 97.00 0.18 0.61 100.0 SNHG14-220 retained intron testis (Tissue)
ENST00000559466.1 ENST00000559466.1_665_676_+ 665–676 590.00 99.33 3.70 100.0 TEKT4P2-201 transcribed unprocessed pseudogene testis (Tissue)
ENST00000561554.5 ENST00000561554.5_276_321_+ 276–321 3539.00 6.99 22.17 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_311_344_+ 311–344 14.00 0.03 0.09 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_316_344_+ 316–344 1128.00 2.23 7.07 100.0 RPL4-202 retained intron testis (Tissue)
ENST00000561554.5 ENST00000561554.5_276_344_+ 276–344 37983.00 75.04 238.00 92.48 RPL4-202 retained intron testis (Tissue)