ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_1_53_+ 1–53 71.00 13.81 0.58 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-68019897 tRNA-transcript-chr17-68019897_1_33_+ 1–33 5.00 27.78 0.04 100.0 TRNA-TRANSCRIPT-CHR17-68019897 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-75033906 tRNA-transcript-chr17-75033906_12_29_+ 12–29 107.00 82.95 0.87 100.0 TRNA-TRANSCRIPT-CHR17-75033906 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_8_53_+ 8–53 26.00 0.52 0.21 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_21_72_+ 21–72 2.00 0.04 0.02 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_17_54_+ 17–54 38.00 0.77 0.31 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_34_+ 1–34 12.00 0.24 0.10 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_1_49_+ 1–49 28.00 0.56 0.23 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8119752 tRNA-transcript-chr17-8119752_34_53_+ 34–53 25.00 0.50 0.20 100.0 TRNA-TRANSCRIPT-CHR17-8119752 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_10_32_+ 10–32 3.00 0.04 0.02 60.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_13_32_+ 13–32 9.00 0.11 0.07 75.0 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8125746 tRNA-transcript-chr17-8125746_1_52_+ 1–52 762.00 9.01 6.22 99.09 TRNA-TRANSCRIPT-CHR17-8125746 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-8222238 tRNA-transcript-chr17-8222238_1_33_+ 1–33 68.00 17.75 0.56 58.12 TRNA-TRANSCRIPT-CHR17-8222238 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-7930279 tRNA-transcript-chr1-7930279_1_33_+ 1–33 7.00 100.00 0.06 100.0 TRNA-TRANSCRIPT-CHR1-7930279 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR19-45478602 tRNA-transcript-chr19-45478602_1_37_+ 1–37 4.00 28.57 0.03 100.0 TRNA-TRANSCRIPT-CHR19-45478602 SeC(e) tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR20-45322361 tRNA-transcript-chr20-45322361_1_33_+ 1–33 9.00 100.00 0.07 100.0 TRNA-TRANSCRIPT-CHR20-45322361 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_32_+ 1–32 2406.00 48.02 19.64 91.27 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_1_52_+ 1–52 65.00 1.30 0.53 90.28 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR21-17454789 tRNA-transcript-chr21-17454789_3_52_+ 3–52 7.00 0.14 0.06 9.72 TRNA-TRANSCRIPT-CHR21-17454789 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_33_+ 1–33 78.65 21.97 0.64 78.65 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_28_+ 1–28 16.00 4.47 0.13 33.33 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-130337128 tRNA-transcript-chr2-130337128_1_35_+ 1–35 33.12 9.25 0.27 30.95 TRNA-TRANSCRIPT-CHR2-130337128 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR2-203364408 tRNA-transcript-chr2-203364408_2_32_+ 2–32 462.00 86.19 3.77 97.67 TRNA-TRANSCRIPT-CHR2-203364408 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR3-104160680 tRNA-transcript-chr3-104160680_12_33_+ 12–33 2.00 1.08 0.02 100.0 TRNA-TRANSCRIPT-CHR3-104160680 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR5-181188854 tRNA-transcript-chr5-181188854_1_32_+ 1–32 227.00 13.19 1.85 79.93 TRNA-TRANSCRIPT-CHR5-181188854 Pro tRNA A375 (Cell line)