ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-54957869 tRNA-transcript-chr1-54957869_16_32_+ 16–32 3.00 1.55 0.02 100.0 TRNA-TRANSCRIPT-CHR1-54957869 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-65869062 tRNA-transcript-chr15-65869062_8_33_+ 8–33 11.00 0.22 0.09 100.0 TRNA-TRANSCRIPT-CHR15-65869062 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_4_33_+ 4–33 4.00 0.37 0.03 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_16_32_+ 16–32 19.00 1.76 0.16 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_29_+ 1–29 3.00 0.28 0.02 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_52_+ 1–52 282.00 26.16 2.30 68.45 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_55_+ 1–55 175.00 16.23 1.43 57.38 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR15-78860562 tRNA-transcript-chr15-78860562_1_41_+ 1–41 24.00 2.23 0.20 100.0 TRNA-TRANSCRIPT-CHR15-78860562 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_31_53_+ 31–53 472.00 27.25 3.85 100.0 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3158922 tRNA-transcript-chr16-3158922_3_32_+ 3–32 216.00 12.47 1.76 48.76 TRNA-TRANSCRIPT-CHR16-3158922 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3172048 tRNA-transcript-chr16-3172048_32_53_+ 32–53 277.00 17.89 2.26 100.0 TRNA-TRANSCRIPT-CHR16-3172048 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_13_25_+ 13–25 8.00 0.63 0.07 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_47_73_+ 47–73 1.00 0.08 0.01 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_41_+ 1–41 99.00 7.81 0.81 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_13_+ 1–13 4.00 0.32 0.03 100.0 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3175691 tRNA-transcript-chr16-3175691_1_34_+ 1–34 700.00 55.25 5.71 95.11 TRNA-TRANSCRIPT-CHR16-3175691 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3182635 tRNA-transcript-chr16-3182635_31_53_+ 31–53 187.00 14.94 1.53 100.0 TRNA-TRANSCRIPT-CHR16-3182635 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191501 tRNA-transcript-chr16-3191501_1_33_+ 1–33 225.00 34.09 1.84 93.36 TRNA-TRANSCRIPT-CHR16-3191501 Lys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-3191989 tRNA-transcript-chr16-3191989_31_53_+ 31–53 45.00 4.76 0.37 100.0 TRNA-TRANSCRIPT-CHR16-3191989 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_52_+ 1–52 34.00 33.66 0.28 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-636736 tRNA-transcript-chr16-636736_1_35_+ 1–35 8.00 7.92 0.07 100.0 TRNA-TRANSCRIPT-CHR16-636736 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR16-70789507 tRNA-transcript-chr16-70789507_1_48_+ 1–48 40.00 0.47 0.33 100.0 TRNA-TRANSCRIPT-CHR16-70789507 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-19860862 tRNA-transcript-chr17-19860862_1_32_+ 1–32 36.00 75.00 0.29 100.0 TRNA-TRANSCRIPT-CHR17-19860862 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-39154491 tRNA-transcript-chr17-39154491_1_34_+ 1–34 1.00 1.52 0.01 100.0 TRNA-TRANSCRIPT-CHR17-39154491 Cys tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR17-49192528 tRNA-transcript-chr17-49192528_32_53_+ 32–53 9.00 1.75 0.07 100.0 TRNA-TRANSCRIPT-CHR17-49192528 Gln tRNA A375 (Cell line)