ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000823801.1 ENST00000823801.1_153_169_+ 153–169 115.98 2.29 0.95 62.02 ENST00000823801 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_322_+ 252–322 8880.00 19.36 72.48 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_278_318_+ 278–318 28.00 0.06 0.23 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_290_318_+ 290–318 137.00 0.30 1.12 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000828033.1 ENST00000828033.1_252_318_+ 252–318 36075.00 78.66 294.44 100.0 GAS5-377 lncRNA A375 (Cell line)
ENST00000833535.1 ENST00000833535.1_763_828_+ 763–828 16.00 5.67 0.13 100.0 TAF12-DT-204 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_387_463_+ 387–463 277887.00 96.32 2268.08 99.88 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_422_463_+ 422–463 146.00 0.05 1.19 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_402_463_+ 402–463 569.00 0.20 4.64 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836993.1 ENST00000836993.1_410_463_+ 410–463 1129.00 0.39 9.21 100.0 ZFAS1-238 lncRNA A375 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_352_+ 305–352 892.00 1.83 7.28 100.0 ZFAS1-242 lncRNA A375 (Cell line)
ENST00000836997.1 ENST00000836997.1_305_380_+ 305–380 46687.00 96.03 381.05 100.0 ZFAS1-242 lncRNA A375 (Cell line)
ENST00000837997.1 ENST00000837997.1_211_224_+ 211–224 43.00 34.13 0.35 100.0 ENST00000837997 lncRNA A375 (Cell line)
ENST00000837997.1 ENST00000837997.1_214_225_+ 214–225 19.00 15.08 0.16 100.0 ENST00000837997 lncRNA A375 (Cell line)
ENST00000839036.1 ENST00000839036.1_40_61_+ 40–61 206.00 70.31 1.68 80.47 ENST00000839036 lncRNA A375 (Cell line)
ENST00000849527.1 ENST00000849527.1_293_307_+ 293–307 3.00 7.14 0.02 100.0 ENST00000849527 lncRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_3_32_+ 3–32 92.00 15.81 0.75 92.93 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121016845 tRNA-transcript-chr1-121016845_2_52_+ 2–52 175.00 30.07 1.43 100.0 TRNA-TRANSCRIPT-CHR1-121016845 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-121020729 tRNA-transcript-chr1-121020729_1_54_+ 1–54 83.00 1.09 0.68 100.0 TRNA-TRANSCRIPT-CHR1-121020729 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_23_+ 1–23 183.00 79.22 1.49 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-145157157 tRNA-transcript-chr1-145157157_1_33_+ 1–33 9.00 3.90 0.07 100.0 TRNA-TRANSCRIPT-CHR1-145157157 Val tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-146037061 tRNA-transcript-chr1-146037061_1_53_+ 1–53 49.00 33.11 0.40 100.0 TRNA-TRANSCRIPT-CHR1-146037061 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-148032790 tRNA-transcript-chr1-148032790_1_53_+ 1–53 53.00 11.55 0.43 100.0 TRNA-TRANSCRIPT-CHR1-148032790 Gln tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-149692805 tRNA-transcript-chr1-149692805_4_33_+ 4–33 78.00 53.79 0.64 87.64 TRNA-TRANSCRIPT-CHR1-149692805 Pseudo tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-149712552 tRNA-transcript-chr1-149712552_1_39_+ 1–39 81.00 1.06 0.66 100.0 TRNA-TRANSCRIPT-CHR1-149712552 Val tRNA A375 (Cell line)