ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
TRNA-TRANSCRIPT-CHR1-159141611 tRNA-transcript-chr1-159141611_3_20_+ 3–20 4.00 20.00 0.03 100.0 TRNA-TRANSCRIPT-CHR1-159141611 Arg tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_4_34_+ 4–34 57.00 14.84 0.47 87.69 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_32_53_+ 32–53 3.00 0.78 0.02 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161440825 tRNA-transcript-chr1-161440825_40_71_+ 40–71 64.00 16.67 0.52 100.0 TRNA-TRANSCRIPT-CHR1-161440825 Asp tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161448951 tRNA-transcript-chr1-161448951_1_26_+ 1–26 442.00 74.41 3.61 100.0 TRNA-TRANSCRIPT-CHR1-161448951 Leu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_1_53_+ 1–53 212.00 4.19 1.73 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_14_49_+ 14–49 933.00 18.46 7.62 93.11 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_34_+ 21–34 10.00 0.20 0.08 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_16_42_+ 16–42 79.00 1.56 0.64 86.81 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_4_33_+ 4–33 227.00 4.49 1.85 35.97 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161454608 tRNA-transcript-chr1-161454608_21_49_+ 21–49 14.00 0.28 0.11 100.0 TRNA-TRANSCRIPT-CHR1-161454608 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-161480566 tRNA-transcript-chr1-161480566_1_32_+ 1–32 9.00 52.94 0.07 100.0 TRNA-TRANSCRIPT-CHR1-161480566 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16545939 tRNA-transcript-chr1-16545939_1_52_+ 1–52 1363.00 21.75 11.12 86.32 TRNA-TRANSCRIPT-CHR1-16545939 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_1_32_+ 1–32 3.00 15.79 0.02 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16678271 tRNA-transcript-chr1-16678271_14_32_+ 14–32 5.00 26.32 0.04 100.0 TRNA-TRANSCRIPT-CHR1-16678271 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16727285 tRNA-transcript-chr1-16727285_2_32_+ 2–32 20.00 33.90 0.16 100.0 TRNA-TRANSCRIPT-CHR1-16727285 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-167715488 tRNA-transcript-chr1-167715488_8_31_+ 8–31 83.00 6.63 0.68 100.0 TRNA-TRANSCRIPT-CHR1-167715488 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_18_53_+ 18–53 86.00 1.37 0.70 100.0 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-16861921 tRNA-transcript-chr1-16861921_1_35_+ 1–35 35.00 0.56 0.29 27.78 TRNA-TRANSCRIPT-CHR1-16861921 Gly tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_1_32_+ 1–32 76.00 29.46 0.62 96.2 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR11-76235825 tRNA-transcript-chr11-76235825_3_32_+ 3–32 8.00 3.10 0.07 9.52 TRNA-TRANSCRIPT-CHR11-76235825 Pro tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR12-124939966 tRNA-transcript-chr12-124939966_1_53_+ 1–53 25.00 14.53 0.20 100.0 TRNA-TRANSCRIPT-CHR12-124939966 Ala tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_33_+ 1–33 1948.00 38.70 15.90 83.35 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR1-248874248 tRNA-transcript-chr1-248874248_1_39_+ 1–39 136.00 2.70 1.11 100.0 TRNA-TRANSCRIPT-CHR1-248874248 Glu tRNA A375 (Cell line)
TRNA-TRANSCRIPT-CHR12-98503503 tRNA-transcript-chr12-98503503_1_33_+ 1–33 13.00 18.84 0.11 100.0 TRNA-TRANSCRIPT-CHR12-98503503 Asp tRNA A375 (Cell line)