ENCFF476SLG

Library Details

Organism: Homo Sapiens
Biosample: A375 (Cell line)
GEO DB ID: Not available
ENCODE Experiment ID: ENCSR376XXO
Description: Part of ENCODE experiment ENCSR376XXO. The libraries contained in this experiment come from independent growths of melanoma cell line, A375. They are stranded SE101 Illumina Hi-Seq RNA-Seq libraries from rRNA-depleted Total RNA < 200 nucleotides in size that was pre-treated with TAP prior to cloning.
Author: Thomas Gingeras, CSHL

sncRNAs in this Library

Precursor Transcript ID sncRNA Name sncRNA position in precursor Expression Expression Fraction Expression (CPM) Prominence Transcript Name Transcript Type Biosample
ENST00000778783.1 ENST00000778783.1_84_171_+ 84–171 6.00 50.00 0.05 100.0 ENST00000778783 lncRNA A375 (Cell line)
ENST00000779378.1 ENST00000779378.1_905_928_+ 905–928 1.00 100.00 0.01 100.0 MIR155HG-205 lncRNA A375 (Cell line)
ENST00000785178.1 ENST00000785178.1_899_938_+ 899–938 354.00 32.04 2.89 100.0 ENST00000785178 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_38_80_+ 38–80 44.00 5.83 0.36 77.19 ENST00000786284 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_46_80_+ 46–80 315.00 41.72 2.57 100.0 ENST00000786284 lncRNA A375 (Cell line)
ENST00000786284.1 ENST00000786284.1_40_80_+ 40–80 13.00 1.72 0.11 27.08 ENST00000786284 lncRNA A375 (Cell line)
ENST00000788343.1 ENST00000788343.1_17_107_+ 17–107 1795.00 76.48 14.65 92.48 ENST00000788343 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_7_63_+ 7–63 2197.44 38.54 17.94 64.99 ENST00000797550 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_63_+ 9–63 417.29 7.32 3.41 12.34 ENST00000797550 lncRNA A375 (Cell line)
ENST00000797550.1 ENST00000797550.1_9_52_+ 9–52 167.00 2.93 1.36 29.2 ENST00000797550 lncRNA A375 (Cell line)
ENST00000806893.1 ENST00000806893.1_425_447_+ 425–447 10987.00 64.35 89.67 94.72 MIR181A1HG-212 lncRNA A375 (Cell line)
ENST00000806893.1 ENST00000806893.1_465_486_+ 465–486 426.00 2.49 3.48 100.0 MIR181A1HG-212 lncRNA A375 (Cell line)
ENST00000812667.1 ENST00000812667.1_308_348_+ 308–348 871.00 61.17 7.11 100.0 C19orf48P-218 lncRNA A375 (Cell line)
ENST00000812667.1 ENST00000812667.1_307_393_+ 307–393 309.00 21.70 2.52 100.0 C19orf48P-218 lncRNA A375 (Cell line)
ENST00000815283.1 ENST00000815283.1_298_361_+ 298–361 1.00 100.00 0.01 100.0 SNHG18-220 lncRNA A375 (Cell line)
ENST00000817026.1 ENST00000817026.1_659_679_+ 659–679 81.00 35.06 0.66 100.0 ENST00000817026 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_105_169_+ 105–169 308.77 6.11 2.52 41.56 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_126_169_+ 126–169 65.00 1.29 0.53 100.0 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_109_169_+ 109–169 68.89 1.36 0.56 43.33 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_103_169_+ 103–169 245.18 4.85 2.00 44.9 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_86_169_+ 86–169 188.00 3.72 1.53 100.0 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_78_169_+ 78–169 2208.00 43.67 18.02 99.01 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_107_169_+ 107–169 186.63 3.69 1.52 36.74 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_131_169_+ 131–169 103.00 2.04 0.84 84.43 ENST00000823279 lncRNA A375 (Cell line)
ENST00000823279.1 ENST00000823279.1_151_169_+ 151–169 59.37 1.17 0.48 37.82 ENST00000823279 lncRNA A375 (Cell line)